genome.fa.s6112.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006112.1 Hibiscus syriacus cultivar Beakdansim tig00014487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63382

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897--1926	2	15.0	2	100	0	60	50	0	0	50	1.00
2277--2316	20	2.0	20	85	0	53	35	10	7	47	1.65
10243--10289	2	23.5	2	100	0	94	48	0	51	0	1.00
10878--11115	118	2.0	118	93	1	406	37	10	8	42	1.70
13568--13633	32	2.1	32	88	2	98	57	3	6	33	1.38
24472--24820	20	17.5	20	86	3	452	34	26	19	19	1.96
25502--25548	24	2.0	24	87	8	69	25	14	21	38	1.92
25723--25747	12	2.1	12	100	0	50	72	0	28	0	0.86
28030--28335	19	17.4	19	80	16	367	46	18	20	14	1.83
28030--28357	33	9.5	33	78	16	264	46	18	21	14	1.84
28058--28335	52	5.2	52	92	5	379	46	17	21	14	1.83
28097--28335	71	3.4	70	86	10	369	46	17	20	14	1.83
28364--28465	19	5.6	19	85	12	151	14	23	17	44	1.86
28571--28607	14	2.6	14	91	0	65	45	21	0	32	1.52
30586--30642	14	3.7	14	77	20	60	45	22	21	10	1.82
30567--30657	33	2.8	33	94	0	164	46	21	20	10	1.82
30530--30657	19	7.2	19	76	17	123	46	24	18	10	1.81
30654--30788	19	7.6	19	75	16	128	8	17	28	44	1.79
30660--30751	33	2.8	33	93	3	150	7	18	28	45	1.76
30832--31304	93	5.1	93	98	0	921	46	18	12	22	1.83
30832--31304	185	2.5	186	98	0	921	46	18	12	22	1.83
33010--33099	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33002--33116	33	3.5	33	95	0	212	45	20	24	9	1.81
33009--33121	19	6.8	18	72	23	88	43	22	24	9	1.83
33117--33161	19	2.4	19	92	0	72	8	17	26	46	1.78
33294--33364	33	2.2	33	92	0	115	47	18	22	11	1.80
33546--33600	22	2.5	22	81	0	74	20	16	40	23	1.91
33746--33939	20	9.6	20	80	6	203	19	19	25	35	1.95
33995--34046	20	2.6	20	96	0	95	21	13	26	38	1.90
34702--34767	34	1.9	34	87	6	98	31	6	19	42	1.76
38739--38795	30	1.9	30	85	7	80	33	22	10	33	1.88
40331--40378	23	2.1	23	100	0	96	58	8	29	4	1.46
43248--43278	13	2.5	13	94	5	55	77	0	0	22	0.77
44950--45039	19	4.3	20	76	18	103	30	28	5	35	1.80
45042--45102	21	3.0	21	87	2	79	22	19	26	31	1.98
48546--48579	17	2.0	17	94	0	59	44	5	14	35	1.70
48757--48900	36	3.8	36	74	18	146	18	24	19	37	1.94
50084--50117	17	2.0	17	94	0	59	44	5	14	35	1.70
52471--52525	26	2.1	27	93	3	94	67	10	9	12	1.43
52374--52636	137	1.9	138	92	0	438	51	13	12	22	1.75
52498--52755	112	2.3	112	93	2	432	49	12	15	22	1.78
52768--53118	182	1.9	181	91	1	578	43	11	15	29	1.81
56099--56143	24	1.9	23	86	4	63	64	2	0	33	1.06
56613--56640	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56665--56714	25	2.0	26	88	4	75	32	0	0	68	0.90
57759--57792	17	2.0	17	100	0	68	29	0	5	64	1.17
59934--59960	13	2.1	13	100	0	54	51	0	7	40	1.30
60228--60270	6	7.8	5	85	10	50	20	20	37	20	1.95
60228--60272	17	2.6	17	96	0	81	20	22	35	22	1.96
60815--61135	159	2.0	162	84	6	420	33	15	5	45	1.68
61987--62101	61	1.9	61	83	0	149	42	14	15	26	1.86

Tables:   1

The End!