genome.fa.s6113.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006113.1 Hibiscus syriacus cultivar Beakdansim tig00014489_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81423

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4596--4642	23	2.0	23	100	0	94	36	21	4	38	1.73
4752--4790	17	2.2	18	90	4	62	43	0	0	56	0.99
5030--5069	3	13.3	3	100	0	80	67	0	0	32	0.91
5251--5280	15	2.0	15	100	0	60	46	20	13	20	1.83
6706--6997	149	2.0	149	89	1	451	40	10	26	23	1.86
14673--14700	14	2.0	14	100	0	56	50	14	21	14	1.78
16925--17025	51	2.0	51	96	0	184	34	11	21	31	1.90
17804--17904	51	2.0	51	96	0	184	34	11	21	31	1.90
19665--19692	14	2.0	14	100	0	56	50	14	21	14	1.78
30316--30437	60	2.0	61	84	4	158	49	16	16	18	1.80
50543--50602	29	2.1	29	100	0	120	26	13	13	46	1.80
54240--54284	16	2.8	16	100	0	90	35	13	26	24	1.92
54335--54382	23	2.1	23	88	0	69	35	12	18	33	1.89
54800--54895	23	4.2	23	91	0	138	38	22	5	33	1.77
55300--55386	39	2.2	39	93	0	147	18	13	19	48	1.81
55642--55678	18	2.1	18	89	0	56	51	10	5	32	1.60
56066--56116	25	2.0	25	92	0	84	39	19	7	33	1.81
56381--56432	23	2.3	22	90	6	77	44	19	1	34	1.62
56391--56453	23	2.7	23	90	0	90	38	19	6	36	1.77
56795--56860	25	2.6	25	80	0	87	42	13	9	34	1.76
59327--60217	183	4.9	183	97	0	1631	33	16	14	35	1.89
63462--63504	20	2.3	18	85	14	61	20	16	11	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63467--63513	20	2.4	19	82	10	67	19	17	10	53	1.72
63635--63692	20	3.1	18	78	11	62	17	15	13	53	1.73
63744--64184	227	1.9	226	94	1	776	39	7	7	46	1.60
67717--67826	55	2.0	55	94	1	195	44	17	16	21	1.86
71382--71406	6	4.2	6	100	0	50	0	16	36	48	1.46
73713--73965	31	8.1	31	76	3	240	36	12	18	32	1.88
73913--74013	30	3.3	30	92	1	157	43	13	11	30	1.81

Tables:   1

The End!