Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006114.1 Hibiscus syriacus cultivar Beakdansim tig00014490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125832

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4445--4480
11
3.3
11
88
0
54
75
8
0
16
1.04
14179--14265
36
2.4
36
82
0
102
32
17
11
39
1.85
14293--14354
22
3.1
22
63
29
57
27
16
17
38
1.91
14282--14369
37
2.4
37
90
0
140
26
18
15
39
1.90
14216--14436
104
2.1
103
89
0
343
26
17
16
39
1.90
14318--14569
67
3.8
67
81
4
267
28
17
14
39
1.89
14669--15321
140
4.7
140
84
3
794
29
28
15
26
1.96
15486--15559
3
24.7
3
100
0
148
32
33
0
33
1.58
22012--22052
19
2.2
19
100
0
82
29
14
46
9
1.77
25227--25263
2
18.5
2
100
0
74
51
0
0
48
1.00
27091--27254
31
5.3
31
90
0
256
27
12
10
48
1.75
31568--31690
61
2.0
61
96
0
228
31
17
13
37
1.89
32287--32320
17
2.0
17
100
0
68
17
23
5
52
1.66
32757--32789
12
2.8
12
86
13
50
84
3
6
6
0.84
36344--36422
26
3.0
26
84
0
104
29
20
25
25
1.99
40026--40081
17
3.3
17
92
0
94
50
12
26
10
1.73
42198--42233
6
5.8
6
90
6
54
27
5
0
66
1.13
45366--45406
17
2.4
17
88
8
57
75
2
12
9
1.13
46157--46220
26
2.5
26
100
0
128
26
21
23
28
1.99
48103--48149
17
2.8
16
73
20
51
61
8
4
25
1.43
48335--48391
25
2.4
24
79
5
62
56
5
5
33
1.44
48388--48432
2
23.0
2
95
4
83
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64034--64100
31
2.2
31
89
7
102
28
19
8
43
1.81
64051--64148
31
3.3
29
79
13
103
26
20
9
43
1.81
67729--67775
14
3.4
14
100
0
94
14
12
27
44
1.82
71602--71720
57
2.1
57
98
0
229
31
12
31
23
1.92
74291--74351
32
1.9
32
86
0
86
24
13
18
44
1.85
79206--79359
77
2.0
78
96
1
283
40
11
15
33
1.83
83362--83395
15
2.3
15
100
0
68
17
23
23
35
1.95
84850--84905
23
2.4
23
80
14
62
41
3
0
55
1.17
97879--97959
21
3.8
22
77
7
78
23
38
23
14
1.92
100220--100244
12
2.1
12
100
0
50
32
0
32
36
1.58
106633--106681
19
2.6
18
83
6
62
81
0
14
4
0.83
109679--109944
137
1.9
137
82
1
327
32
28
15
23
1.95
110328--110379
3
16.7
3
80
7
50
28
3
1
65
1.21
110328--110377
22
2.3
22
82
0
64
28
4
2
66
1.21
113664--113714
15
3.4
15
83
0
57
9
15
62
11
1.53
114035--114118
43
2.0
43
92
4
143
35
20
11
32
1.89
115189--115259
35
2.0
35
86
5
99
38
11
18
32
1.86
119233--119324
42
2.2
42
82
1
114
34
22
19
22
1.96

Tables:   1

The End!