Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006116.1 Hibiscus syriacus cultivar Beakdansim tig00014496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58799

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6082--6197
58
2.0
58
94
0
205
25
18
18
37
1.93
10246--10291
9
4.7
10
87
12
69
71
0
10
17
1.13
10234--10433
9
20.3
9
71
21
68
73
0
8
17
1.11
10283--10409
7
17.9
7
68
20
50
70
0
7
21
1.15
10282--10378
11
8.6
11
72
21
60
71
1
5
22
1.12
10261--10393
26
5.3
26
68
24
72
70
0
7
21
1.16
10339--10415
11
7.4
11
77
13
51
72
0
9
18
1.10
10265--10408
49
2.9
48
73
19
127
70
0
7
20
1.16
10234--10447
20
10.8
19
68
18
84
73
0
7
18
1.10
10387--10434
13
3.7
13
81
10
53
83
0
10
6
0.81
10387--10435
19
2.5
19
86
3
62
83
0
10
6
0.80
10439--10500
2
32.5
2
90
9
103
53
0
0
46
1.00
10583--10647
3
21.3
3
80
9
53
66
1
3
29
1.16
12914--12950
18
2.1
18
94
0
65
40
8
18
32
1.80
13171--13204
2
17.0
2
100
0
68
50
0
0
50
1.00
16148--16202
22
2.6
22
85
5
78
23
23
16
36
1.94
16273--16322
21
2.5
21
83
6
59
30
28
14
28
1.95
22943--22989
22
2.1
22
88
0
67
25
25
23
25
2.00
22947--22998
22
2.4
22
83
0
59
28
23
21
26
1.99
27230--27265
18
2.0
18
100
0
72
38
0
50
11
1.38
29701--29744
2
22.0
2
100
0
88
50
0
0
50
1.00
32059--32083
10
2.5
10
100
0
50
52
28
0
20
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39344--39407
21
2.9
22
72
23
62
21
18
28
31
1.97
39325--39407
44
2.0
41
86
9
114
19
20
28
31
1.97
46174--46296
44
2.8
44
91
0
201
21
21
24
33
1.97
46175--46290
21
5.3
21
69
19
85
21
18
25
33
1.97
47872--47918
2
23.5
2
100
0
94
48
0
0
51
1.00
53555--53794
125
1.9
124
91
2
392
32
14
19
33
1.92
56991--57073
22
3.9
22
90
6
134
33
19
12
34
1.88
57865--57976
46
2.4
46
86
2
145
29
23
16
31
1.96
57766--58163
122
3.3
121
90
1
611
26
21
19
32
1.97
57989--58099
45
2.4
45
90
1
177
24
22
21
31
1.98
58032--58247
75
2.9
75
91
4
357
24
18
22
34
1.96
58187--58291
45
2.3
43
82
6
120
26
20
21
30
1.98
58112--58410
117
2.5
118
86
4
406
26
19
20
33
1.97
57819--58411
311
1.9
318
88
2
912
26
20
20
32
1.97
58303--58504
45
4.4
46
83
4
239
28
22
20
29
1.98
58308--58504
92
2.1
92
92
0
322
28
22
20
27
1.99

Tables:   1

The End!