Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006117.1 Hibiscus syriacus cultivar Beakdansim tig00014498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83772

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5256--5312
21
2.6
22
75
10
64
40
10
14
35
1.80
5232--5309
22
3.7
20
71
11
66
35
11
14
38
1.82
5812--6133
166
1.9
164
90
4
504
35
13
12
38
1.83
6141--6339
36
5.4
36
71
7
168
33
19
10
37
1.85
6138--6364
73
3.1
73
94
0
400
32
20
11
35
1.89
6178--6370
36
5.3
36
70
4
163
33
20
11
34
1.89
6830--6906
39
2.0
39
92
0
127
22
42
18
16
1.89
8335--8410
12
6.7
11
77
18
68
30
2
1
65
1.14
8352--8410
23
2.5
25
82
17
74
30
3
0
66
1.08
8344--8402
20
2.6
22
78
17
68
32
3
0
64
1.10
8415--8447
2
16.5
2
93
0
57
51
0
0
48
1.00
8537--8584
18
2.5
19
77
16
55
45
6
0
47
1.27
8460--8692
129
1.8
127
84
10
323
38
9
7
45
1.64
13140--13258
45
2.7
45
86
3
152
58
4
0
36
1.23
13771--13811
16
2.6
16
88
3
57
41
12
17
29
1.85
25350--25379
14
2.1
15
93
6
53
13
3
26
56
1.52
25472--25590
42
2.9
41
83
1
139
31
18
24
25
1.97
27879--28033
80
1.9
81
89
1
240
45
9
18
27
1.79
28005--28112
42
2.6
41
82
5
119
41
18
9
30
1.82
31940--31964
12
2.1
12
100
0
50
0
8
8
84
0.79
42326--42409
42
2.0
42
83
4
107
28
29
25
16
1.97
43802--43841
19
2.1
19
100
0
80
20
15
10
55
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45931--46062
66
2.0
66
98
0
255
36
20
7
35
1.81
47664--47710
20
2.4
19
89
10
76
55
10
17
17
1.69
47452--47924
181
2.6
182
91
0
741
42
14
17
26
1.87
47845--47891
20
2.4
19
82
10
67
53
10
17
19
1.72
47856--47896
20
2.2
19
83
12
50
51
14
17
17
1.77
50103--50167
21
3.1
21
88
0
94
43
10
29
16
1.82
50204--50258
25
2.2
25
90
0
83
29
0
49
21
1.50
52047--52096
19
2.6
19
96
0
91
34
2
10
54
1.45
52350--53270
200
4.6
200
95
0
1610
35
14
18
31
1.91
53565--54001
183
2.4
183
96
0
811
35
15
16
32
1.90
57350--57397
23
2.1
23
88
0
69
33
16
10
39
1.83
57350--57512
87
1.9
87
90
2
265
32
13
10
43
1.78
57434--57478
23
2.0
23
86
0
63
37
15
8
37
1.79
70494--70650
64
2.5
63
85
3
197
33
19
22
23
1.97
71110--71136
6
4.5
6
100
0
54
66
0
14
18
1.25
71172--71202
14
2.3
14
94
5
55
35
3
25
35
1.72
82734--82799
31
2.2
30
84
10
82
33
6
10
50
1.62

Tables:   1

The End!