Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006118.1 Hibiscus syriacus cultivar Beakdansim tig00014512_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107123

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12066--12152
8
11.5
8
73
20
80
75
1
13
9
1.09
12066--12161
24
3.9
25
80
13
101
75
1
15
8
1.10
12101--12158
20
3.2
19
88
9
77
75
0
15
8
1.02
13035--13690
334
2.0
334
89
1
1010
36
16
21
25
1.94
13624--13688
20
3.3
20
67
18
55
44
12
21
21
1.85
13514--13806
117
2.6
114
87
8
399
39
14
21
24
1.91
18338--18810
156
3.0
156
84
5
569
25
15
22
36
1.93
18394--18966
156
3.7
149
81
9
548
24
12
23
39
1.89
37147--37250
42
2.5
41
80
7
113
23
22
24
30
1.99
37061--37623
240
2.4
235
89
4
834
25
21
18
33
1.96
37546--38035
139
3.6
135
85
6
655
25
22
17
35
1.95
38605--38654
18
2.8
18
93
6
84
20
24
12
44
1.85
38794--38935
54
2.7
50
82
6
160
42
20
9
27
1.82
38855--39363
54
9.6
53
78
8
464
40
15
10
33
1.82
38856--39363
106
4.8
106
82
7
489
40
15
10
33
1.82
39882--40195
156
2.0
155
98
1
610
21
22
18
37
1.94
41418--41473
24
2.4
23
85
11
71
75
0
7
17
1.03
41418--41500
24
3.6
23
75
15
64
71
2
4
21
1.17
42746--42946
35
5.6
35
73
20
118
44
5
4
45
1.48
42786--42868
41
2.1
38
88
6
121
42
6
3
48
1.45
43333--43458
10
13.3
9
74
15
78
3
14
3
79
0.98
43346--43453
41
2.7
40
81
11
112
1
15
3
78
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43333--43442
50
2.2
50
84
7
136
3
16
1
78
0.98
43346--43442
18
5.9
16
73
15
83
2
17
2
78
0.95
43348--43445
11
8.5
11
70
19
58
2
16
2
79
0.92
43350--43459
12
8.9
11
74
20
69
1
14
3
80
0.94
43367--43478
51
2.2
51
79
10
122
2
15
3
78
1.00
49265--49295
15
2.1
15
100
0
62
45
32
0
22
1.53
54316--54361
14
3.1
14
77
17
56
54
28
13
4
1.57
57582--57621
20
2.0
20
100
0
80
35
10
25
30
1.88
57941--57988
20
2.5
20
96
3
89
20
20
16
41
1.90
60601--60689
28
3.1
28
84
9
115
33
11
21
33
1.89
63184--63316
59
2.2
60
82
6
173
40
15
10
33
1.81
65773--65815
21
2.0
21
95
0
77
55
4
30
9
1.52
67273--67297
2
12.5
2
100
0
50
48
0
0
52
1.00
68668--68721
27
2.0
27
96
0
99
51
5
16
25
1.66
71531--71555
5
5.0
5
100
0
50
20
0
0
80
0.72
86598--86627
15
2.0
15
100
0
60
33
6
20
40
1.78
88164--88196
16
2.0
17
88
5
50
75
0
6
18
1.00
88246--88295
23
2.2
22
83
16
59
70
0
8
22
1.13
88769--88837
35
2.0
35
97
0
129
30
18
11
39
1.87
89324--89540
106
2.0
106
85
0
290
20
17
26
35
1.95
89605--89851
106
2.3
106
82
3
289
23
19
24
32
1.97
89272--89821
280
2.0
281
88
1
834
23
17
24
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94341--94412
31
2.3
30
81
11
83
25
19
20
34
1.96
94355--94436
31
2.6
31
88
0
119
23
18
28
30
1.97
98501--98596
31
3.1
31
83
5
106
21
19
25
33
1.97
104538--104590
23
2.5
20
73
26
54
69
0
5
24
1.09
104609--104702
34
2.7
33
71
14
82
61
2
7
28
1.34
105155--105226
35
2.1
35
94
0
126
27
20
11
40
1.87
106237--106304
28
2.4
29
80
7
77
72
1
4
22
1.11

Tables:   1

The End!