Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006119.1 Hibiscus syriacus cultivar Beakdansim tig00014513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56703

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1505--1617
58
2.0
55
89
5
172
37
17
19
25
1.94
13550--13612
21
2.9
21
83
4
63
20
38
25
15
1.92
13594--13633
21
1.9
21
89
0
62
25
40
25
10
1.86
26895--26933
2
20.0
2
89
5
62
48
0
0
51
1.00
28138--28194
21
2.7
21
75
10
53
14
7
8
70
1.33
28208--28232
2
12.5
2
100
0
50
48
0
0
52
1.00
28256--28471
4
52.8
4
70
18
60
16
8
0
74
1.10
28243--28300
29
2.0
29
93
0
98
12
8
0
79
0.94
28239--28528
55
5.3
54
70
13
164
14
9
1
74
1.12
28317--28532
28
7.5
28
69
17
104
15
8
1
74
1.13
28314--28518
15
13.5
15
68
21
56
15
8
1
74
1.12
28237--28527
21
14.3
20
67
17
86
15
9
1
74
1.11
28239--28528
9
31.9
9
72
16
138
14
9
1
74
1.12
30360--30398
19
2.1
19
85
9
53
33
0
5
61
1.18
31986--32021
15
2.4
15
95
0
63
13
44
13
27
1.82
32727--32762
18
2.0
18
89
10
56
63
0
0
36
0.94
34526--34591
29
2.2
30
91
2
107
36
30
16
16
1.91
34526--34614
30
3.0
30
86
1
108
37
26
17
17
1.93
34571--34647
31
2.5
31
85
10
97
36
22
19
22
1.95
34981--35005
12
2.1
12
100
0
50
40
24
0
36
1.55
35571--35732
64
2.5
63
79
7
166
29
19
17
34
1.94
35635--35673
19
2.1
19
95
0
69
33
17
15
33
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39060--39124
31
2.1
31
82
5
78
38
20
16
24
1.93
40005--40062
20
2.6
22
84
10
75
27
22
18
31
1.97
40005--40081
20
3.7
20
76
17
68
28
24
16
29
1.97
40050--40190
64
2.2
63
82
7
169
25
21
18
34
1.96
44755--44804
18
2.8
18
90
3
75
14
30
12
44
1.81
47890--48312
191
2.2
190
88
2
632
28
21
13
37
1.91
48395--48496
20
5.1
20
92
0
168
35
23
19
21
1.96
49073--49169
22
4.4
22
89
0
140
36
13
14
36
1.85
49255--49364
55
2.0
56
90
1
177
31
22
7
38
1.82
53199--53249
18
2.7
18
77
17
59
43
9
17
29
1.81
55495--55549
22
2.3
25
81
12
71
58
1
1
38
1.20
55687--55722
17
2.2
17
90
9
58
77
2
0
19
0.88

Tables:   1

The End!