genome.fa.s612.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000612.1 Hibiscus syriacus cultivar Beakdansim tig00001186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88077

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2416--2458	12	3.8	12	75	12	54	51	16	9	23	1.73
3906--3947	22	1.9	22	100	0	84	35	28	14	21	1.92
10745--10779	18	1.9	18	94	0	61	28	34	14	22	1.93
14531--14657	23	5.6	23	87	3	170	27	25	24	22	2.00
14537--14657	44	2.7	46	87	5	158	28	26	23	21	1.99
18447--18486	21	1.9	21	90	10	64	32	7	5	55	1.50
24272--24328	29	2.0	29	89	0	87	28	5	10	56	1.55
25427--25483	23	2.4	24	88	2	80	43	14	15	26	1.85
27398--27467	36	1.9	35	83	11	88	48	10	1	40	1.45
27898--27945	4	12.0	4	80	8	53	72	0	4	22	1.01
27895--27945	20	2.5	20	81	9	59	74	0	3	21	0.98
30329--30735	85	4.8	85	84	1	465	26	17	19	36	1.94
31832--32122	146	2.0	145	97	0	555	32	11	21	34	1.90
35342--35518	91	1.9	91	86	2	248	31	18	15	35	1.92
41151--41184	3	11.7	3	87	6	52	61	0	2	35	1.11
42990--43038	19	2.5	19	86	3	62	30	30	16	22	1.96
43102--43140	20	2.0	20	100	0	78	30	20	15	33	1.94
43133--43191	20	3.0	20	94	0	100	35	22	20	22	1.96
43129--43218	40	2.2	41	78	9	96	38	20	17	23	1.93
43291--43349	27	2.2	25	80	16	73	50	25	3	20	1.63
43301--43362	27	2.3	27	94	0	106	50	30	1	17	1.56
43407--43450	22	2.0	22	86	0	61	22	34	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43820--43890	20	3.6	20	86	1	90	12	15	21	50	1.77
45536--45585	21	2.4	21	86	0	64	22	14	32	32	1.93
45964--46069	21	5.0	22	79	9	130	19	35	18	25	1.95
45964--46071	42	2.6	42	89	0	162	20	36	18	25	1.95
47415--47464	14	3.6	14	83	5	75	28	0	20	52	1.47
47410--47473	14	4.8	13	77	7	74	29	0	17	53	1.44
47410--47480	27	2.6	27	97	0	133	30	0	18	50	1.47
47354--47526	91	1.9	91	92	0	292	30	1	16	51	1.55
47900--47935	18	2.0	18	94	0	63	19	2	22	55	1.56
50009--50062	24	2.2	24	93	0	90	40	16	18	24	1.90
50187--50220	12	2.8	12	90	0	50	14	0	29	55	1.40
50990--51036	18	2.5	19	86	6	60	42	10	17	29	1.82
51029--51139	20	5.5	20	81	8	118	32	12	23	31	1.92
51029--51162	20	6.7	19	81	10	110	32	12	23	31	1.92
51170--51216	20	2.3	20	96	0	85	19	19	25	36	1.95
51362--51572	20	10.5	20	78	7	110	33	13	23	30	1.93
51362--51494	60	2.2	58	78	13	139	35	12	22	30	1.90
51399--51493	40	2.4	40	89	3	147	34	11	25	28	1.91
51537--51652	60	1.9	61	81	8	139	23	15	25	35	1.94
53016--53116	50	2.0	51	94	1	177	23	28	16	30	1.97
54631--54686	27	2.1	27	93	0	94	37	8	12	41	1.74
56765--56811	23	2.0	23	100	0	94	25	8	34	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59335--59413	39	2.0	39	100	0	158	36	22	5	35	1.77
59964--59997	16	2.1	16	88	5	50	23	5	8	61	1.47
60646--60693	22	2.2	22	92	0	78	31	16	10	41	1.82
65181--65237	29	1.9	30	85	3	80	35	7	15	42	1.75
66372--66430	9	6.6	9	74	14	50	71	0	5	23	1.06
66373--66442	36	1.9	36	82	5	88	70	0	4	25	1.06
67457--67503	20	2.3	21	89	7	71	65	0	2	31	1.04
67785--67962	84	2.1	84	88	2	259	25	20	25	29	1.99
67981--68728	105	7.1	104	94	2	1291	23	17	24	33	1.97
72415--72473	9	6.6	9	74	14	50	71	0	5	23	1.06
72416--72485	36	1.9	36	82	5	88	70	0	4	25	1.06
73501--73547	20	2.3	21	89	7	71	65	0	2	31	1.04
75769--75794	2	13.0	2	100	0	52	50	0	0	50	1.00
82139--82612	182	2.6	182	86	1	646	43	12	16	27	1.84
82542--82584	20	2.3	19	88	11	63	51	11	16	20	1.75
87438--88056	180	3.4	181	93	2	1057	41	13	17	27	1.86
87438--88077	181	3.6	180	92	3	1069	41	13	17	27	1.87

Tables:   1

The End!