genome.fa.s6120.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006120.1 Hibiscus syriacus cultivar Beakdansim tig00014514_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76652

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1216--1243	7	4.0	7	100	0	56	14	14	0	71	1.15
1161--1250	36	2.5	35	74	10	85	16	10	1	72	1.17
1163--1277	54	2.1	55	84	10	148	15	10	1	72	1.20
1272--1378	4	24.8	4	72	21	58	18	8	0	71	1.16
1171--1293	54	2.2	56	81	9	146	16	8	1	73	1.14
1277--1378	32	3.4	31	78	15	106	18	8	0	71	1.17
1309--1394	32	2.7	32	76	16	81	18	12	0	68	1.20
4916--5094	88	2.0	87	89	1	268	32	16	19	31	1.94
6267--7472	168	7.2	168	88	1	1636	33	24	18	23	1.97
6267--7477	84	14.5	84	84	1	1430	33	24	18	23	1.97
8133--8510	39	10.0	36	72	16	218	47	3	6	43	1.44
8122--8459	39	8.8	38	75	13	289	46	3	6	43	1.47
8127--8459	76	4.3	78	77	11	287	47	3	6	42	1.47
8215--8451	36	6.4	34	70	19	120	48	3	5	42	1.44
8291--8523	73	3.1	71	75	13	195	48	3	5	42	1.41
8545--8587	9	4.3	10	83	16	54	20	0	0	79	0.74
8544--8589	13	3.4	14	80	14	53	21	0	0	78	0.76
8545--8587	20	2.2	20	91	8	70	20	0	0	79	0.74
8552--8589	7	5.7	7	90	9	62	23	0	0	76	0.79
9557--9646	16	5.3	16	73	19	58	11	6	3	78	1.05
9636--9688	22	2.4	22	84	12	65	15	11	0	73	1.09
9698--9737	18	2.2	19	86	13	57	15	17	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10774--10833	28	2.2	27	85	8	77	60	1	1	36	1.17
21860--21928	23	3.0	22	70	17	52	46	1	2	49	1.25
21972--22041	23	3.1	22	82	12	72	51	0	2	45	1.16
21963--22058	47	2.1	46	81	13	108	55	1	3	40	1.23
22075--22125	13	3.7	14	72	15	52	58	0	3	37	1.16
26943--27053	34	3.1	34	68	25	102	27	13	13	45	1.81
27891--27934	21	2.2	20	83	4	52	59	11	0	29	1.32
27956--28001	25	1.9	24	82	8	58	47	8	2	41	1.46
28081--28124	22	2.0	22	81	4	52	59	6	4	29	1.44
31271--31346	31	2.5	31	80	2	82	42	2	15	39	1.61
33272--33314	21	2.0	21	81	0	50	30	30	25	13	1.94
33341--33378	20	1.9	20	88	0	58	23	34	31	10	1.89
33854--34157	149	2.0	149	94	0	527	26	14	21	37	1.92
34136--34180	23	2.0	23	86	0	63	20	24	28	26	1.99
36453--36495	14	3.1	14	80	6	52	18	37	18	25	1.94
40090--40122	16	2.1	16	100	0	66	36	0	12	51	1.39
48907--48939	3	11.0	3	100	0	66	66	0	0	33	0.92
52778--52898	41	3.0	42	86	6	160	33	15	17	33	1.91
53764--53794	8	3.9	8	91	0	53	51	12	9	25	1.70
53882--53938	29	2.0	29	83	13	73	26	7	17	49	1.72
58875--58998	43	2.9	43	81	6	144	27	25	17	29	1.98
58863--59014	43	3.5	44	72	19	133	27	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59234--59358	59	2.2	58	85	7	175	33	10	12	44	1.76
60310--60389	20	3.9	19	74	16	63	23	5	2	68	1.21
63953--64108	64	2.4	64	86	2	206	36	20	14	28	1.92
64041--64399	146	2.4	147	88	0	522	34	22	15	26	1.94
64475--64839	109	3.4	108	91	0	586	36	23	15	24	1.93
64770--64882	43	2.6	43	97	0	208	32	21	18	27	1.97
64661--64989	152	2.2	152	89	1	500	35	21	16	27	1.94
64813--65061	108	2.3	109	89	2	385	34	22	16	26	1.95
64552--65061	260	2.0	260	89	1	790	35	23	16	25	1.95
68998--69039	22	1.9	22	85	0	57	30	23	7	38	1.82
68789--69230	239	1.8	241	86	5	646	29	23	12	34	1.91
68789--69242	81	5.7	81	86	4	600	29	23	12	34	1.91
70913--70969	22	2.4	24	77	11	64	28	35	1	35	1.68

Tables:   1

The End!