genome.fa.s6121.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006121.1 Hibiscus syriacus cultivar Beakdansim tig00014516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67944

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22--338	55	5.8	55	86	2	404	33	17	20	28	1.95
4991--5138	76	2.0	72	86	10	203	28	1	11	58	1.41
9594--9662	23	3.0	23	83	6	86	20	23	23	33	1.97
14417--14518	5	19.8	5	74	13	82	18	4	3	72	1.18
14408--14459	22	2.3	22	96	3	95	13	3	3	78	1.02
16401--16520	62	1.9	63	91	5	199	29	0	14	55	1.44
16967--17022	28	2.0	28	92	0	94	28	17	21	32	1.96
17117--17165	19	2.6	18	81	9	62	20	4	2	73	1.10
21222--21247	2	13.0	2	100	0	52	50	0	50	0	1.00
23443--23494	20	2.6	20	100	0	104	30	25	17	26	1.97
23438--23554	61	1.9	61	82	0	144	33	25	17	23	1.96
23503--23555	20	2.7	20	93	0	88	24	28	20	26	1.99
24111--24155	19	2.4	19	92	0	72	48	26	15	8	1.74
24151--24334	19	10.1	19	75	15	156	11	22	22	43	1.85
24151--24334	33	5.1	38	74	15	156	11	22	22	43	1.85
24288--24334	20	2.3	20	79	13	60	12	25	14	46	1.80
26336--26458	42	2.9	42	79	2	113	24	35	16	23	1.94
26398--26458	21	3.0	20	64	7	50	26	36	16	21	1.94
27817--27852	14	2.6	14	95	0	63	30	0	25	44	1.54
27994--28093	33	3.0	33	83	4	121	19	18	20	43	1.89
30382--30406	12	2.1	12	100	0	50	0	28	0	72	0.86
31697--31764	19	3.8	19	85	12	92	14	22	16	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33784--33850	19	3.5	19	83	4	89	38	23	22	14	1.92
33839--33896	14	3.9	14	79	16	71	48	24	17	10	1.78
33823--33901	32	2.4	33	95	2	142	46	22	18	11	1.81
33930--33987	14	3.9	14	77	16	62	10	15	24	50	1.75
33913--34003	32	2.8	33	93	3	157	12	17	21	48	1.80
33988--34042	20	2.8	19	83	8	65	16	23	23	36	1.94
34524--34568	18	2.5	18	88	0	72	13	15	44	26	1.83
35882--35925	20	2.2	20	87	0	61	50	20	18	11	1.77
36438--36538	20	4.9	21	71	12	59	18	19	18	42	1.89
36400--36494	20	4.7	20	80	2	91	23	17	24	34	1.96
36422--36556	41	3.3	41	82	4	139	19	21	20	38	1.94
36483--36575	20	4.6	20	78	4	96	17	24	18	39	1.91
36483--36575	41	2.3	41	100	0	186	17	24	18	39	1.91
37649--37681	2	16.5	2	100	0	66	48	0	0	51	1.00
38525--38573	22	2.3	22	80	16	59	44	2	0	53	1.12
38508--38577	27	2.5	28	73	13	72	40	2	0	57	1.14
41845--41891	20	2.3	20	85	0	58	27	23	4	44	1.72
42854--42905	2	26.0	2	100	0	104	0	50	0	50	1.00
46485--46524	18	2.3	17	87	8	62	52	5	12	30	1.60
59255--59314	2	30.0	2	100	0	120	50	0	0	50	1.00
60981--61229	86	2.9	86	96	1	444	41	10	14	33	1.80
61342--61856	259	2.0	244	90	6	798	30	17	15	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64576--65164	302	2.0	302	95	1	1056	35	15	14	34	1.88
64864--65349	181	2.7	183	95	1	861	34	16	14	34	1.90
65043--65646	300	2.0	301	95	1	1088	34	16	14	34	1.89
65224--65468	119	2.1	119	93	1	420	38	15	13	31	1.87
64576--65831	482	2.6	484	94	1	2202	34	16	14	34	1.89
65343--65924	182	3.2	182	90	3	910	34	15	14	35	1.88
67121--67164	3	15.0	3	85	4	63	29	34	2	34	1.70
67136--67192	12	4.8	12	86	4	71	21	33	7	38	1.80
67136--67192	6	9.7	6	80	3	53	21	33	7	38	1.80

Tables:   1

The End!