Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006122.1 Hibiscus syriacus cultivar Beakdansim tig00014517_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72700

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
934--989
24
2.3
25
96
3
105
39
12
5
42
1.65
2197--2232
18
2.0
18
94
0
63
69
0
0
30
0.89
4078--4145
20
3.4
19
88
8
100
26
35
23
14
1.94
4147--4194
22
2.2
22
96
0
87
18
29
20
31
1.97
9421--9450
15
1.9
16
93
6
53
43
0
13
43
1.43
23664--23704
2
20.5
2
100
0
82
48
0
0
51
1.00
41781--41851
35
2.0
35
91
0
115
22
14
28
35
1.93
41932--41997
30
2.2
30
94
0
114
36
13
7
42
1.73
43177--43215
14
2.8
14
92
0
69
12
12
15
58
1.62
43255--43295
17
2.4
18
80
15
52
46
17
2
34
1.61
43444--43507
10
6.1
10
78
10
74
12
12
18
56
1.67
44471--44769
147
2.0
147
95
1
537
31
22
16
29
1.95
46350--46382
12
2.8
12
86
4
50
39
6
24
30
1.79
47173--47213
18
2.3
18
91
4
66
29
4
2
63
1.28
50852--50898
24
2.0
24
83
8
60
57
12
2
27
1.47
56535--57649
134
8.2
134
80
6
1045
32
21
14
30
1.94
58879--59379
134
3.7
134
82
5
549
29
22
14
32
1.94
66402--66443
3
14.0
3
100
0
84
33
0
0
66
0.92
66614--66653
21
1.9
21
84
0
53
70
0
0
30
0.88
67003--67060
23
2.5
23
88
0
89
25
13
13
46
1.81
67011--67072
23
2.4
26
71
20
67
27
14
9
48
1.75
67098--67142
23
2.0
23
82
8
56
55
4
4
35
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67179--67227
19
2.6
19
96
0
89
34
16
10
38
1.82
69837--69893
25
2.3
25
100
0
114
40
12
5
42
1.65
69842--69899
25
2.5
23
91
8
91
41
10
3
44
1.55
71109--71143
14
2.5
14
85
0
52
74
0
0
25
0.82
71117--71146
16
1.9
15
93
6
51
70
0
0
30
0.88

Tables:   1

The End!