Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006123.1 Hibiscus syriacus cultivar Beakdansim tig00014522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40343

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1343--1437
2
48.5
2
89
4
149
47
1
2
49
1.20
2788--2945
5
32.2
5
72
14
89
17
2
5
75
1.10
2823--2942
46
2.6
46
81
15
140
16
2
5
75
1.08
5507--5554
23
2.1
23
92
0
78
35
8
18
37
1.81
6194--6831
182
3.5
182
91
1
1021
27
16
13
42
1.85
6909--6957
21
2.3
21
96
0
89
36
10
16
36
1.82
6798--7069
132
2.1
133
94
0
474
26
13
14
44
1.83
6930--7185
112
2.3
113
93
0
424
25
14
14
45
1.82
6702--7182
244
2.0
245
92
1
795
26
14
13
45
1.82
8994--9242
129
1.9
129
82
1
311
32
14
17
36
1.89
13311--13346
18
1.9
19
88
5
56
33
0
0
66
0.92
19465--19497
16
2.1
16
88
11
50
63
0
0
36
0.95
20206--20244
16
2.4
16
91
0
60
46
20
0
33
1.51
20213--20265
16
3.7
14
82
14
56
47
15
0
37
1.45
20280--20425
5
30.2
5
86
11
207
58
0
0
40
1.03
22209--22344
59
2.3
60
83
8
163
36
11
13
38
1.82
30503--30536
10
3.4
10
91
0
59
58
0
0
41
0.98
31823--31952
68
1.9
67
84
4
172
30
0
13
55
1.44
32524--32567
18
2.4
19
88
3
63
20
6
0
72
1.07
32590--32619
15
2.0
15
100
0
60
33
6
0
60
1.23
37772--37848
5
15.8
5
69
10
52
19
5
2
72
1.15
37758--37809
9
5.8
9
82
8
70
11
0
3
84
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38471--38632
69
2.3
69
86
6
213
28
0
15
55
1.45
38471--38652
70
2.6
72
84
7
216
28
0
15
54
1.45
39234--39276
17
2.4
19
88
7
63
20
4
0
74
1.00

Tables:   1

The End!