genome.fa.s6124.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006124.1 Hibiscus syriacus cultivar Beakdansim tig00014524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97783

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--73	35	2.0	36	86	8	99	44	21	0	34	1.53
1111--1210	35	2.9	35	86	3	130	34	1	20	45	1.58
4230--4461	79	3.0	79	93	4	393	36	7	24	31	1.84
12493--12522	15	2.1	15	93	6	53	56	0	33	10	1.32
14016--14041	4	6.5	4	100	0	52	0	26	46	26	1.53
20444--20852	213	1.9	211	87	3	588	41	7	15	35	1.75
22751--22792	2	21.0	2	100	0	84	50	0	0	50	1.00
27432--27471	18	2.3	17	86	4	53	42	5	0	52	1.23
33700--33746	20	2.3	20	79	13	51	36	10	2	51	1.49
33923--33953	3	10.3	3	100	0	62	0	35	0	64	0.94
35879--35948	18	3.7	18	89	10	113	15	22	32	28	1.95
37617--37692	30	2.6	30	97	2	145	40	11	9	38	1.74
37702--37932	95	2.4	95	93	0	392	35	9	16	39	1.80
37844--38006	74	2.3	72	82	5	197	35	7	14	42	1.74
37905--38101	95	2.0	96	82	5	234	35	9	16	39	1.80
37795--38223	169	2.5	168	92	0	696	36	8	15	40	1.77
38263--38416	66	2.4	65	90	5	240	38	7	15	38	1.77
43508--43541	16	2.1	16	88	0	50	29	2	0	67	1.05
43777--43846	29	2.3	29	87	4	95	25	5	2	65	1.28
43819--43865	24	2.0	24	83	4	60	34	4	4	57	1.38
43891--43937	12	3.8	12	75	25	53	51	2	2	44	1.25
43918--44058	66	2.2	65	80	7	160	40	5	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43957--44059	30	3.2	32	79	10	111	35	6	0	57	1.25
44038--44082	18	2.5	18	100	0	90	48	0	0	51	1.00
44073--44104	11	2.9	11	95	0	55	59	0	0	40	0.97
44088--44125	16	2.4	16	90	0	58	68	0	0	31	0.90
44061--44121	27	2.4	24	83	8	77	62	0	0	37	0.96
54541--56235	165	10.2	163	82	4	1508	31	23	19	25	1.98
54563--56234	414	4.0	414	87	1	2084	31	23	19	25	1.98
54581--56237	579	2.9	575	84	3	2081	31	23	19	25	1.98
56822--56950	37	3.5	35	75	17	102	43	6	9	41	1.62
56861--57019	36	4.4	35	80	6	147	44	7	6	42	1.58
56843--57019	73	2.4	73	79	9	180	44	7	7	40	1.63
57475--57590	21	5.6	21	69	10	60	32	27	18	21	1.96
57578--57770	20	9.6	20	83	5	237	34	26	19	19	1.95
58148--58220	33	2.2	33	92	2	121	12	21	17	47	1.80
58300--58391	41	2.3	40	87	7	132	46	18	20	14	1.83
58300--58391	21	4.6	20	82	6	123	46	18	20	14	1.83
58414--58500	19	5.1	18	73	23	82	10	22	19	47	1.80
58419--58541	33	3.5	33	85	10	156	10	23	18	47	1.80
58431--58495	14	4.3	14	76	17	67	7	23	21	47	1.76
58443--58539	20	5.2	20	73	16	100	11	23	17	47	1.80
60226--60448	93	2.4	93	99	0	437	22	13	18	44	1.85
60613--60639	14	1.9	14	100	0	54	48	29	14	7	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60578--60655	19	4.4	19	81	15	103	47	28	16	7	1.74
60651--60785	19	7.6	19	73	16	119	11	20	23	45	1.83
60673--60729	14	3.7	14	75	20	51	10	22	22	43	1.84
60656--60748	33	2.8	33	95	0	168	10	21	21	46	1.81
62711--62746	14	2.6	14	95	0	63	33	0	22	44	1.53
62853--62931	19	4.4	19	83	16	114	46	17	21	13	1.83
62887--62945	14	3.8	14	74	23	55	47	18	23	10	1.79
62868--62949	34	2.4	34	95	2	148	45	18	24	12	1.83
62998--63090	33	2.8	33	100	0	186	12	22	18	46	1.83
63017--63071	14	3.6	14	73	21	56	10	23	20	45	1.82
62940--63115	52	3.3	52	86	7	223	13	23	17	44	1.85
62979--63143	52	3.2	52	84	7	210	13	21	18	46	1.83
62946--63157	33	6.2	33	79	15	125	12	22	18	45	1.83
62946--63157	86	2.5	85	94	3	363	12	22	18	45	1.83
63031--63176	53	2.8	53	80	9	140	13	20	19	45	1.84
63776--63800	12	2.1	12	100	0	50	0	28	0	72	0.86
63975--64021	24	2.0	24	87	8	69	38	21	14	25	1.92
64733--64904	40	4.3	39	87	5	220	21	18	25	34	1.96
64714--64904	20	9.6	19	86	5	177	21	17	25	35	1.95
64714--64904	60	3.2	60	85	3	233	21	17	25	35	1.95
64891--64942	20	2.6	20	87	6	70	11	19	26	42	1.85
64733--64942	40	5.2	40	85	2	219	19	18	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64714--64942	60	3.8	60	82	2	228	20	17	25	37	1.94
64910--65007	21	4.8	20	75	10	81	21	19	21	37	1.94
64910--65008	42	2.4	43	77	11	100	21	19	22	37	1.94
72884--72949	21	3.2	21	82	2	62	34	15	16	33	1.90
72914--72955	21	2.0	21	85	0	57	35	16	14	33	1.89
75329--75372	22	2.0	22	86	4	61	56	0	2	40	1.11
75346--75374	13	2.1	14	93	6	51	65	0	0	34	0.93
78621--78693	31	2.4	30	82	15	87	53	9	12	24	1.68
79285--79365	41	2.0	41	92	0	135	54	14	7	23	1.66
79722--79752	16	2.0	16	93	6	55	48	0	6	45	1.28
84490--84520	14	2.3	13	94	5	53	61	29	0	9	1.28
90733--90762	4	7.5	4	100	0	60	23	0	0	76	0.78
96534--96570	2	18.5	2	100	0	74	51	0	0	48	1.00

Tables:   1

The End!