genome.fa.s6125.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006125.1 Hibiscus syriacus cultivar Beakdansim tig00014526_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135424

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2774--2851	31	2.5	31	85	2	95	24	20	26	28	1.99
2783--2854	31	2.4	31	88	2	101	22	19	27	30	1.98
8729--8757	2	14.5	2	100	0	58	51	0	0	48	1.00
8776--8828	23	2.5	20	73	26	54	67	1	5	24	1.22
9402--9473	35	2.1	35	97	0	135	27	22	11	38	1.88
10496--10564	19	3.2	21	80	17	63	69	1	7	21	1.21
10487--10553	28	2.4	28	75	7	66	73	1	4	20	1.09
12072--12945	84	10.6	83	75	6	722	25	19	25	30	1.98
12071--12928	164	5.2	164	77	6	752	25	19	25	30	1.98
12030--12933	248	3.6	245	86	4	1228	24	19	24	30	1.98
18059--18086	6	4.7	6	100	0	56	71	0	0	28	0.86
18235--18303	21	3.2	21	80	12	61	72	2	4	20	1.15
18228--18302	11	6.6	11	73	21	50	73	2	4	20	1.12
18240--18306	25	2.9	21	78	13	53	74	2	4	17	1.11
19542--19581	3	13.7	3	84	5	55	70	0	2	27	1.01
19546--19605	14	3.9	14	76	20	57	68	1	1	28	1.09
19529--19595	27	2.2	32	82	15	90	73	0	2	23	0.97
19528--19586	20	3.1	19	83	7	75	72	0	3	23	0.99
19647--19704	31	1.9	30	86	10	82	50	5	1	43	1.35
19677--19923	39	6.4	38	80	10	263	44	7	4	44	1.52
29616--29653	20	2.0	19	90	10	60	36	7	31	23	1.84
35969--36040	31	2.3	31	83	4	101	27	9	25	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35999--36090	36	2.5	37	81	12	109	25	9	26	39	1.86
37483--37639	60	2.6	60	77	5	156	34	21	5	38	1.77
38920--38957	19	2.0	19	89	0	58	23	7	0	68	1.16
39010--39049	3	14.0	3	80	19	50	37	0	0	62	0.95
39143--39203	26	2.2	29	83	16	85	40	4	0	54	1.22
39225--39282	2	30.5	2	83	10	77	48	1	0	50	1.11
39534--39700	4	37.8	4	69	15	50	20	5	3	69	1.25
39641--39735	18	5.4	19	75	13	78	17	5	3	73	1.15
39599--39718	36	3.4	36	81	5	120	17	6	3	72	1.20
39669--39736	17	3.9	18	77	11	70	19	7	4	69	1.30
39689--39748	17	3.6	18	76	19	58	18	10	3	68	1.32
53127--53164	19	2.0	19	89	0	58	23	7	0	68	1.16
53216--53255	3	14.0	3	80	19	50	35	0	0	65	0.93
53355--53407	2	26.5	2	79	7	54	47	5	0	47	1.26
53529--53622	3	32.3	3	69	25	60	30	4	0	64	1.12
53529--53615	21	3.8	24	68	20	69	31	3	0	65	1.09
53511--53605	44	2.2	42	80	14	111	27	4	1	67	1.16
53535--53622	23	3.9	22	77	12	90	31	3	0	64	1.10
53859--53944	31	2.7	31	85	12	104	16	5	3	74	1.15
53807--53910	14	7.4	14	67	12	61	19	5	2	72	1.18
53883--53946	17	3.9	17	76	15	64	18	7	4	68	1.32
53883--53958	17	4.7	18	73	23	62	18	9	3	68	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56263--56294	2	16.5	2	93	6	57	50	0	0	50	1.00
58669--59055	184	2.1	183	90	3	611	45	8	3	42	1.51
59119--59177	30	2.0	30	83	6	75	37	8	22	32	1.84
60358--60469	20	5.7	20	85	5	122	35	24	12	27	1.91
60358--60449	41	2.3	40	86	3	123	34	25	13	27	1.92
60382--60488	19	5.5	19	82	8	110	31	23	13	31	1.93
60625--60661	16	2.4	16	86	8	51	29	5	0	64	1.15
61256--61289	12	2.8	12	90	0	50	55	29	0	14	1.40
61415--61468	24	2.2	24	90	0	81	24	14	18	42	1.88
63866--63914	20	2.4	21	83	10	75	16	18	24	40	1.90
63968--64111	66	2.2	66	92	4	240	52	17	1	29	1.53
65496--65536	21	2.0	21	90	0	64	19	26	34	19	1.96
65706--65747	12	3.5	12	80	6	50	64	4	2	28	1.26
65844--65893	21	2.4	21	82	0	64	30	28	20	22	1.98
70773--70943	40	4.3	40	76	16	160	40	23	16	19	1.91
70772--70943	60	2.9	58	78	14	206	40	23	16	20	1.91
70768--71004	20	11.8	20	73	15	127	38	23	13	24	1.91
70977--71023	18	2.5	19	82	6	60	29	23	14	31	1.95
70834--71004	80	2.1	80	79	6	186	39	23	12	24	1.90
87063--87098	18	2.0	18	94	0	63	55	22	2	19	1.56
87298--87341	14	3.1	14	78	21	56	45	27	18	9	1.79
88946--89061	21	5.5	21	84	3	144	26	18	32	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88922--89038	42	2.8	42	85	5	148	26	19	33	20	1.97
89343--89392	21	2.4	21	86	0	73	32	28	18	22	1.97
90780--90814	17	2.1	17	100	0	70	28	11	11	48	1.74
91197--91250	20	2.7	19	83	8	72	46	22	16	14	1.84
91648--91689	22	1.9	22	85	0	57	21	7	45	26	1.77
91844--92155	20	15.6	20	77	15	231	20	16	24	39	1.91
91844--92194	40	8.8	40	75	17	264	20	15	25	39	1.91
91844--92129	60	4.8	60	86	8	379	19	16	24	39	1.91
92585--92611	14	1.9	14	100	0	54	51	0	0	48	1.00
98947--99067	63	1.9	62	86	1	170	47	6	9	35	1.63
102891--102931	20	2.2	19	91	8	66	34	14	26	24	1.94
103687--103844	21	7.4	21	71	7	111	24	15	24	35	1.94
103687--103844	44	3.7	42	74	5	136	24	15	24	35	1.94
105593--105635	20	2.3	19	88	8	61	32	2	0	65	1.06
105593--105637	19	2.4	18	82	10	54	35	2	0	62	1.08
111852--111901	25	2.0	25	88	0	73	50	4	2	44	1.32
113096--113124	3	9.7	3	100	0	58	65	0	0	34	0.93
116352--116387	17	2.1	18	89	5	56	50	0	2	47	1.15
125260--125450	4	48.2	4	90	4	307	25	2	24	47	1.65
130073--130098	2	13.0	2	100	0	52	50	0	0	50	1.00
131371--131783	186	2.2	185	87	8	592	31	12	14	40	1.84
134247--134298	6	8.2	6	79	12	50	75	1	3	19	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134352--134386	11	3.1	11	87	4	52	77	0	5	17	0.96

Tables:   1

The End!