Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006126.1 Hibiscus syriacus cultivar Beakdansim tig00014528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72053

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12850--12913
23
2.8
23
82
0
92
32
26
25
15
1.95
13754--13780
2
13.5
2
100
0
54
51
0
0
48
1.00
17417--17456
2
20.0
2
100
0
80
50
0
0
50
1.00
24275--24315
17
2.7
15
82
17
57
4
14
34
46
1.66
24433--24487
26
2.1
27
83
10
69
52
21
10
14
1.72
35951--35986
17
2.1
17
94
0
63
36
0
2
61
1.11
42047--42106
30
2.0
30
96
0
111
25
21
26
26
2.00
42688--42870
75
2.4
75
83
3
235
39
10
15
33
1.82
42857--42939
23
3.6
23
91
0
121
36
15
13
34
1.87
43583--43765
75
2.4
75
86
0
258
41
11
15
31
1.82
43750--43812
23
2.7
23
87
0
81
38
15
7
38
1.77
43830--43866
17
2.1
19
85
10
51
64
0
10
24
1.25
43823--44013
75
2.5
75
79
6
217
46
8
13
31
1.74
44344--44391
17
2.8
17
100
0
96
47
0
6
45
1.27
44601--44868
108
2.5
107
82
3
306
35
12
12
39
1.80
45504--45617
57
2.0
57
94
0
201
24
27
20
28
1.99
45588--45654
21
3.3
19
78
13
80
22
20
19
37
1.95
45588--45667
42
2.0
40
92
5
133
25
22
18
33
1.97
45596--45662
19
3.3
19
80
15
89
26
22
17
32
1.96
45750--45776
6
4.5
6
100
0
54
33
48
18
0
1.49
46517--46681
21
8.0
21
74
11
144
35
22
20
21
1.96
46517--46655
42
3.4
42
92
2
237
35
22
20
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46517--46681
42
4.0
41
88
4
226
35
22
20
21
1.96
51711--51736
8
3.2
8
100
0
52
46
15
38
0
1.46
52580--52613
17
1.9
18
94
5
61
26
0
8
64
1.22
52613--52650
8
4.8
8
100
0
76
34
0
0
65
0.93
56437--56493
21
2.8
21
86
2
71
43
5
8
42
1.58
57442--57516
38
2.0
37
84
5
98
49
4
0
46
1.20
66922--67035
30
4.0
29
81
10
130
45
7
11
35
1.69
66961--67032
14
5.3
14
68
18
62
45
11
9
33
1.72
66959--67034
26
2.8
27
86
4
109
44
10
9
35
1.71
69688--69840
60
2.7
58
79
11
172
36
19
1
42
1.60
69688--69821
31
4.7
29
66
14
73
38
20
0
41
1.58

Tables:   1

The End!