genome.fa.s6129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006129.1 Hibiscus syriacus cultivar Beakdansim tig00014531_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66444

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2388--2439	27	1.9	27	88	0	77	3	1	36	57	1.28
2395--2450	27	2.1	27	89	0	85	7	1	32	58	1.35
4574--4629	28	2.0	28	86	6	78	75	3	19	1	1.05
4847--4906	3	20.0	3	100	0	120	66	0	33	0	0.92
4949--4978	15	2.0	15	100	0	60	26	6	33	33	1.83
4951--4984	15	2.3	15	89	0	50	32	8	29	29	1.87
7136--7160	13	1.9	13	100	0	50	64	16	12	8	1.49
9261--9300	16	2.7	16	81	14	50	32	0	0	67	0.91
9322--9412	39	2.3	38	81	10	105	39	13	0	47	1.43
10717--10779	20	3.2	20	81	4	74	36	38	15	9	1.81
10718--10773	19	2.9	19	86	2	67	39	37	14	8	1.77
11631--11688	27	2.1	27	83	0	71	41	20	15	22	1.90
18299--18357	27	2.2	27	79	8	68	49	22	10	18	1.77
27218--27318	35	2.9	35	88	2	141	32	18	15	32	1.93
32868--32913	12	3.8	12	85	8	58	30	4	0	65	1.12
32868--32913	24	1.9	24	86	8	67	30	4	0	65	1.12
33706--33753	24	2.0	23	88	4	69	35	2	2	60	1.20
35136--35177	15	3.0	14	83	10	50	19	19	7	54	1.66
40936--41248	114	2.7	114	93	0	527	31	15	21	32	1.94
43931--43985	22	2.5	22	84	0	74	32	14	16	36	1.89
44659--44839	76	2.4	76	93	0	299	25	19	19	34	1.96
44850--45267	111	3.8	113	94	3	715	36	15	20	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44863--45273	223	1.9	222	93	3	623	36	14	20	27	1.92
51117--51153	19	1.9	19	88	0	56	32	27	16	24	1.96
51183--51221	20	2.0	20	94	0	69	25	23	20	30	1.98
51372--51409	17	2.2	17	100	0	76	31	36	5	26	1.79
52305--52341	14	2.6	14	91	4	56	51	21	21	5	1.68
54323--54357	18	1.9	18	94	0	61	54	25	2	17	1.57
54528--54644	20	5.8	20	88	0	171	32	20	18	28	1.96
54528--54644	40	2.9	40	90	0	189	32	20	18	28	1.96
54528--54644	60	2.0	60	91	0	189	32	20	18	28	1.96
54616--54707	34	2.7	33	77	8	87	35	20	20	22	1.96
54701--54759	20	3.0	20	97	0	109	8	20	25	45	1.79
54894--54932	14	2.8	14	92	0	69	46	17	0	35	1.49
56909--56946	20	1.9	20	88	0	58	52	21	7	18	1.70
56908--56952	20	2.2	20	80	0	54	51	17	11	20	1.75
57026--57078	20	2.7	20	91	2	81	13	18	18	49	1.80
57083--57151	20	3.5	20	82	7	86	17	18	26	37	1.93
57084--57168	40	2.1	40	82	4	100	16	16	25	41	1.89
59088--59141	20	2.7	21	88	8	85	37	27	18	16	1.93
59522--59568	22	2.1	22	96	0	85	19	10	44	25	1.82
59760--59918	20	7.8	20	77	9	144	24	20	24	30	1.98
59760--59879	41	3.0	42	84	8	151	22	20	25	31	1.98
59772--59918	61	2.4	61	83	6	174	24	19	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59933--59980	19	2.5	19	89	3	69	20	14	29	35	1.93

Tables:   1

The End!