genome.fa.s613.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000613.1 Hibiscus syriacus cultivar Beakdansim tig00001190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61192

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700--1789	27	3.4	27	78	7	96	25	16	10	47	1.78
1723--1771	20	2.5	19	83	6	62	22	14	10	53	1.71
6917--7241	40	8.2	40	88	3	381	30	16	11	41	1.83
6917--7203	120	2.4	120	89	1	434	30	16	10	42	1.81
7025--7269	40	6.2	39	86	5	208	31	16	13	38	1.87
7025--7305	40	7.2	38	83	7	194	30	17	13	37	1.89
7292--7337	21	2.2	21	100	0	92	30	28	8	32	1.87
7262--7382	57	2.1	57	92	0	197	29	23	13	33	1.93
7313--7396	36	2.3	36	91	0	132	30	25	10	33	1.90
7318--7442	36	3.4	36	82	7	124	32	20	12	33	1.91
7466--8060	43	13.6	43	82	8	675	28	12	28	30	1.93
7916--8110	54	3.9	51	73	16	174	28	13	27	30	1.94
7861--8101	97	2.5	98	88	2	353	28	13	27	30	1.94
8110--8343	91	2.6	91	91	2	355	26	17	21	35	1.95
8716--8885	91	1.9	91	92	2	288	41	14	20	24	1.89
9040--9086	15	3.1	15	88	11	62	40	0	2	57	1.11
11096--11167	30	2.5	30	82	8	78	22	12	8	56	1.62
20359--20455	38	2.6	38	83	4	108	26	19	14	39	1.90
21555--21588	16	2.2	15	89	5	50	32	0	23	44	1.54
22803--22864	29	2.1	29	93	0	106	35	20	8	35	1.83
27661--27702	2	21.0	2	100	0	84	50	0	0	50	1.00
30640--30680	22	2.0	22	85	9	59	4	41	0	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31434--31475	21	2.0	21	85	0	57	33	11	21	33	1.90
33580--33704	62	2.0	62	98	0	241	31	19	23	26	1.98
34959--35394	54	8.1	54	87	4	601	33	19	18	28	1.95
41872--42372	54	9.3	54	86	1	637	33	17	19	29	1.95
43585--43657	36	2.0	36	100	0	146	27	23	19	30	1.98
44919--45043	49	2.4	52	83	11	143	27	9	14	48	1.74
45302--45369	35	1.9	35	93	0	118	36	14	10	38	1.81
51779--51874	40	2.4	40	89	3	140	20	2	21	55	1.54
51819--52035	75	2.9	74	86	3	296	24	4	18	52	1.63
55691--56150	37	12.4	37	85	9	591	46	2	8	43	1.45
55757--55840	11	7.8	11	67	15	59	46	1	8	44	1.41
55748--55850	32	3.2	32	92	0	170	46	1	7	43	1.43
56201--56258	14	4.5	13	78	20	52	27	3	1	67	1.17
56212--56258	17	2.8	17	96	3	87	27	4	0	68	1.08
56192--56239	24	2.0	24	83	0	60	31	2	2	64	1.16

Tables:   1

The End!