genome.fa.s6132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006132.1 Hibiscus syriacus cultivar Beakdansim tig00014542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117705

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8287--8326	19	2.1	19	100	0	80	47	22	10	20	1.79
8964--8998	17	2.1	17	89	10	54	45	0	0	54	0.99
8961--8998	9	4.3	9	81	18	53	44	0	0	55	0.99
10175--10214	21	1.9	21	85	10	55	45	0	2	52	1.14
10354--10426	6	12.2	6	94	0	128	19	50	13	16	1.77
22503--22546	21	2.2	19	88	8	61	31	0	4	63	1.14
25220--25252	12	2.8	12	100	0	66	24	12	27	36	1.91
27380--27433	20	2.7	20	69	11	56	29	29	14	25	1.95
27441--27484	21	2.1	21	86	0	61	20	25	15	38	1.92
28257--28290	12	2.8	12	90	0	50	55	29	0	14	1.40
28416--28493	24	3.2	24	90	0	120	21	19	20	38	1.94
28669--28707	3	13.0	3	94	0	69	69	0	30	0	0.89
30771--30810	18	2.2	18	90	0	62	47	30	5	17	1.69
31130--31186	20	2.9	21	84	10	75	24	19	21	35	1.96
31276--31325	25	2.0	25	96	0	91	26	8	22	44	1.80
32007--32093	39	2.2	39	95	0	156	48	20	13	17	1.81
32431--32571	61	2.2	63	81	6	160	51	15	0	32	1.49
33936--34031	21	4.6	21	74	8	88	21	17	34	26	1.96
33936--34035	42	2.4	42	80	9	114	22	17	35	26	1.95
34175--34225	4	12.5	4	79	4	57	68	1	1	27	1.11
34175--34222	17	2.9	17	78	3	53	68	2	2	27	1.11
34175--34225	21	2.5	21	77	3	59	68	1	1	27	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36230--36297	20	3.5	20	93	2	111	11	14	20	52	1.73
36558--36626	22	3.1	22	95	0	129	23	11	40	24	1.88
36754--36802	20	2.5	20	89	0	80	20	18	20	40	1.91
36823--36874	20	2.6	19	79	8	68	25	15	34	25	1.95
47647--47716	21	3.3	21	92	4	106	35	1	4	58	1.26
47662--47716	12	4.8	12	78	13	62	38	1	1	58	1.20
47632--47737	30	3.7	29	79	9	92	34	0	2	61	1.17
49181--49211	16	1.9	16	93	0	53	38	3	3	54	1.32
49553--49592	11	3.3	13	80	13	50	50	2	0	47	1.14
49993--50017	7	3.6	7	100	0	50	68	0	0	32	0.90
52348--52389	7	6.0	7	81	8	50	14	16	14	54	1.71
52348--52389	15	3.0	14	83	10	50	14	16	14	54	1.71
52449--52508	27	2.3	27	91	2	104	21	11	5	61	1.49
57286--57408	22	5.6	22	90	0	183	32	13	13	41	1.82
57288--57408	44	2.8	44	93	0	206	33	12	13	41	1.81
58083--58260	76	2.3	76	90	0	275	25	19	21	33	1.97
58284--59164	113	7.7	112	84	7	839	38	13	18	28	1.90
58838--59166	122	2.7	123	87	3	454	38	13	19	27	1.90
59399--59469	21	3.4	21	92	1	108	35	0	4	60	1.16
59399--59485	21	4.1	21	88	4	104	37	0	3	58	1.15
59711--59762	21	2.5	21	81	3	61	38	19	25	17	1.93
59751--59885	20	6.7	20	83	5	146	31	24	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59781--59896	61	1.9	61	87	0	169	33	23	17	25	1.96
60386--60444	20	3.0	20	87	0	73	16	18	22	42	1.89
61761--61805	18	2.5	18	88	0	72	26	44	15	13	1.83
62287--62328	20	2.1	20	86	0	57	35	26	21	16	1.94
62298--62342	20	2.3	20	80	3	56	40	20	22	17	1.92
62342--62397	14	3.7	14	78	17	67	50	23	16	10	1.76
62330--62416	32	2.7	33	96	3	167	48	20	18	12	1.80
62433--62574	14	8.9	14	70	22	68	10	19	21	47	1.79
62428--62508	32	2.5	33	89	2	128	9	20	20	48	1.78
62411--62559	51	2.9	50	89	4	174	11	20	22	46	1.82
62498--62590	33	2.8	33	93	1	161	11	20	21	46	1.82
62428--62582	84	1.9	83	94	1	274	10	20	21	47	1.79
62575--62630	20	2.8	19	86	7	76	16	25	23	35	1.94
62479--62633	19	8.6	19	73	15	125	12	21	21	44	1.85
64499--64534	14	2.6	14	90	0	54	30	0	22	47	1.52
64662--64714	14	3.4	14	77	22	61	47	20	20	11	1.81
65028--65077	20	2.5	20	76	0	64	22	16	22	40	1.91
65104--65155	20	2.5	21	87	3	70	21	23	17	38	1.93
65940--65993	24	2.2	24	90	0	81	22	16	20	40	1.91
66168--66204	12	3.1	12	100	0	74	72	0	27	0	0.84
68494--68659	33	5.0	33	85	5	201	43	19	19	16	1.88
68683--68729	19	2.5	19	96	0	85	12	21	21	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68836--68872	14	2.6	14	91	0	65	45	24	0	29	1.53
70228--70433	42	4.9	41	73	9	164	22	17	36	22	1.95
70225--70378	21	7.3	21	63	10	64	21	18	37	22	1.94
70258--70433	84	2.1	84	98	0	343	23	17	38	21	1.93
70652--70836	91	2.0	90	90	6	291	47	18	12	22	1.82
72571--72659	14	5.6	14	69	23	61	40	22	26	10	1.86
72547--72678	33	4.0	33	92	1	192	40	21	26	10	1.86
72522--72695	19	9.8	19	70	19	117	43	19	24	12	1.85
72696--72740	19	2.4	19	92	0	72	8	15	26	48	1.74
73295--73351	20	2.8	20	89	5	89	29	15	28	26	1.96
73480--73520	21	2.0	21	85	0	55	34	31	17	17	1.93
74916--74946	16	1.9	16	93	0	53	38	3	3	54	1.32
75074--75308	130	1.8	130	80	5	287	40	8	7	43	1.64
76519--76791	138	2.0	137	82	5	327	40	15	12	31	1.85
80540--80607	20	3.2	20	74	11	73	35	14	17	32	1.91
82075--82114	21	1.9	21	84	0	53	32	22	2	42	1.67
82341--82424	23	3.7	23	95	0	141	36	19	23	20	1.95
82316--82424	46	2.4	46	85	0	137	34	20	25	19	1.96
83239--83277	20	2.0	20	84	0	51	20	30	12	35	1.90
83922--83954	16	2.1	16	94	0	57	54	15	9	21	1.68
84506--84554	19	2.5	20	86	3	64	48	6	14	30	1.67
85872--85935	20	3.0	20	76	12	65	35	17	17	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94535--94589	20	2.8	20	91	0	92	32	23	18	25	1.97
94557--94857	95	3.2	94	82	4	361	30	18	15	35	1.92
94578--94854	96	2.9	96	85	1	369	30	17	15	36	1.90
97024--97061	20	1.9	20	94	0	67	36	15	21	26	1.93
97137--97210	22	3.5	22	87	3	107	51	13	10	24	1.73
99526--99550	2	12.5	2	100	0	50	48	0	52	0	1.00
103627--103701	39	1.9	39	100	0	150	26	20	18	34	1.95
104888--104992	52	2.0	52	96	0	192	52	8	8	30	1.62
105365--106045	344	2.0	343	93	3	1080	33	24	12	28	1.93
107085--107185	3	33.7	3	92	4	168	65	0	0	32	1.06
107429--107463	2	17.5	2	100	0	70	51	0	0	48	1.00
112517--112729	58	3.7	58	83	5	261	30	21	10	37	1.88
112539--112729	58	3.3	59	85	3	262	29	22	10	37	1.88
114239--114268	14	2.1	15	93	6	53	80	13	0	6	0.91
116301--116456	53	2.9	53	95	0	267	30	18	19	31	1.96

Tables:   1

The End!