genome.fa.s6135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006135.1 Hibiscus syriacus cultivar Beakdansim tig00014552_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53459

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
876--924	24	2.0	25	92	4	82	40	4	12	42	1.61
10174--10356	45	4.1	45	86	0	240	24	20	16	39	1.92
11257--11283	14	1.9	14	100	0	54	14	22	7	55	1.64
12193--12221	10	2.9	10	100	0	58	20	10	17	51	1.74
23276--23321	22	2.1	22	100	0	92	28	21	23	26	1.99
23282--23329	22	2.2	22	92	0	78	33	22	18	25	1.97
25411--25472	3	20.7	3	96	0	115	32	0	1	66	1.02
28815--28851	2	18.0	2	94	5	65	48	0	2	48	1.15
35676--35706	5	6.2	5	92	0	53	61	0	38	0	0.96
36345--36442	21	4.7	21	80	2	117	38	18	24	18	1.93
36438--36544	20	5.3	20	77	6	90	31	25	17	25	1.97
36328--36461	62	2.2	60	89	4	180	37	19	23	19	1.94
36732--36775	22	2.0	22	95	0	79	20	45	15	18	1.85
37172--37199	11	2.5	11	100	0	56	25	0	0	75	0.81
39128--39210	38	2.2	37	82	8	96	20	16	22	39	1.92
39783--39852	31	2.3	31	92	0	113	25	24	17	32	1.96
41245--41580	81	4.2	81	87	2	462	30	21	12	36	1.90
41751--42356	55	11.3	55	90	4	907	35	19	11	33	1.88
41881--41962	43	1.9	43	94	0	146	36	20	13	29	1.91
41924--42356	219	2.0	220	93	0	751	36	19	11	33	1.87
42723--42762	19	2.0	21	85	14	57	30	20	15	35	1.93
44033--44075	22	2.0	22	81	9	52	41	2	23	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44092--44247	56	2.8	55	83	6	188	33	5	23	36	1.79
44092--44297	58	3.6	56	81	6	202	33	6	23	37	1.80
44092--44285	19	10.2	19	73	8	146	33	5	23	37	1.78
44439--44566	37	3.5	37	86	0	184	28	21	21	28	1.99
44308--44486	66	2.7	66	77	6	166	30	23	22	24	1.99
46407--46452	24	1.9	25	82	8	60	21	2	26	50	1.60
48582--48813	54	4.4	54	80	4	249	27	18	19	34	1.96
48610--48810	108	1.9	105	89	3	312	28	18	18	33	1.95
49233--49280	20	2.5	19	86	6	62	29	27	12	31	1.93
50858--50903	22	2.1	22	96	4	85	21	6	32	39	1.79
51163--51202	20	2.0	21	95	5	73	35	15	20	30	1.93

Tables:   1

The End!