genome.fa.s6136.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006136.1 Hibiscus syriacus cultivar Beakdansim tig00014554_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137434

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2304--2329	7	3.7	7	100	0	52	15	15	30	38	1.88
14092--14138	23	2.0	23	95	0	85	38	17	19	25	1.92
15498--15528	9	3.3	9	91	8	53	9	0	0	90	0.46
15498--15528	10	3.2	10	95	4	55	9	0	0	90	0.46
15498--15536	19	2.1	19	85	0	51	12	2	2	82	0.89
41976--42006	12	2.5	12	94	5	53	48	6	12	32	1.67
43330--43361	7	4.6	7	92	0	55	40	3	0	56	1.15
44378--44445	31	2.2	30	84	5	82	22	32	23	22	1.98
45493--45555	27	2.3	28	86	2	83	23	9	20	46	1.80
51069--51118	23	2.2	23	85	0	64	38	18	14	30	1.89
51158--51207	26	1.9	26	87	0	73	36	12	10	42	1.76
55637--55693	6	9.5	6	79	7	62	82	1	3	12	0.87
55631--55693	24	2.6	24	84	0	81	82	1	3	12	0.86
55631--55694	18	3.2	18	78	20	65	82	1	3	12	0.85
55861--55929	20	3.3	20	72	22	61	72	2	2	21	1.11
57008--57037	13	2.2	14	94	5	53	76	0	10	13	1.01
57015--57063	3	16.3	3	85	12	57	69	0	4	26	1.06
57032--57081	9	6.1	8	84	13	50	64	0	0	36	0.94
57105--57218	33	3.5	31	69	20	88	45	5	4	44	1.46
57105--57296	66	2.9	68	77	19	215	45	5	3	44	1.45
57122--57271	39	4.1	37	79	15	161	46	5	4	43	1.47
57231--57309	27	3.0	27	83	9	99	49	7	2	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57231--57323	26	3.6	26	81	10	84	50	9	2	37	1.47
57390--57436	15	3.2	15	80	14	53	63	0	0	36	0.94
57398--57441	20	2.2	20	87	4	61	68	0	0	31	0.90
57396--57439	23	1.9	23	90	0	70	68	0	0	31	0.90
58974--59038	34	1.9	34	84	12	89	60	16	1	21	1.45
61347--61389	17	2.4	18	78	17	54	62	2	0	34	1.08
61349--61412	22	2.8	22	76	21	60	64	1	0	34	1.03
61366--61412	22	2.0	23	84	15	62	63	2	0	34	1.06
65320--65345	3	8.7	3	100	0	52	0	0	30	69	0.89
66723--66861	35	3.9	35	81	1	170	36	17	24	20	1.94
66718--66861	71	2.0	71	89	2	218	38	17	24	20	1.93
68532--68565	17	1.9	18	88	5	52	8	8	8	73	1.25
69387--69444	10	5.5	10	76	11	53	24	3	6	65	1.33
69376--69447	33	2.2	31	90	7	108	23	5	5	65	1.36
70903--71345	8	55.4	8	96	0	607	25	6	25	43	1.78
75853--76126	64	4.3	64	77	11	233	35	19	17	27	1.94
76777--76844	31	2.2	31	89	0	100	38	13	17	30	1.88
81540--81579	21	1.9	21	89	0	62	10	25	40	25	1.86
81562--81621	19	2.9	20	85	9	68	16	26	35	21	1.95
85425--85464	21	1.9	21	85	10	55	35	10	2	52	1.48
89812--90085	64	4.3	61	75	10	210	35	19	17	27	1.94
90737--90804	31	2.2	31	89	0	100	38	13	17	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94185--94458	64	4.3	64	77	10	249	35	19	17	27	1.94
94183--94458	128	2.2	128	80	6	310	35	19	17	27	1.94
95110--95177	31	2.2	31	86	0	91	39	13	16	30	1.86
98895--98943	22	2.2	23	85	3	64	44	6	10	38	1.63
103623--103691	2	34.5	2	100	0	138	50	0	0	49	1.00
104745--104809	2	32.5	2	100	0	130	50	0	0	49	1.00
105608--105645	8	4.8	8	84	12	51	5	39	0	55	1.23
107504--107905	111	3.6	111	89	1	628	28	16	23	31	1.96
108326--108364	17	2.3	17	100	0	78	10	38	10	41	1.73
116259--116283	2	12.5	2	100	0	50	52	0	0	48	1.00
118046--118070	4	6.2	4	100	0	50	76	0	0	24	0.80
118631--118680	3	17.0	3	87	4	75	62	0	0	38	0.96
118644--118678	17	2.1	17	100	0	70	65	0	0	34	0.93
123188--123280	45	2.1	45	91	0	150	34	24	23	17	1.96
123315--123364	15	3.3	15	78	15	50	18	12	48	22	1.80
128464--128542	41	1.9	41	94	0	140	31	18	17	31	1.95
133135--133185	19	2.6	20	84	3	68	33	15	31	19	1.93
133661--133898	47	5.1	47	86	5	358	44	11	21	22	1.83
133771--133893	20	5.5	20	70	22	93	43	10	24	21	1.84
133661--133905	93	2.6	92	89	3	393	44	11	20	23	1.83

Tables:   1

The End!