genome.fa.s6137.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006137.1 Hibiscus syriacus cultivar Beakdansim tig00014556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61609

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656--725	34	2.0	35	97	2	133	31	25	8	34	1.86
1169--1220	14	3.9	14	80	14	65	71	0	0	28	0.87
1476--2042	168	3.5	162	79	10	555	24	19	23	32	1.98
1506--2042	84	6.6	80	79	7	458	24	19	24	31	1.98
1551--2042	160	3.0	161	82	4	560	24	20	23	31	1.98
2043--2155	34	3.5	32	84	10	142	32	10	16	39	1.83
2109--2446	67	5.0	67	75	12	183	39	12	19	28	1.88
2210--2329	37	3.3	37	81	9	122	40	13	20	25	1.88
2208--2615	36	11.9	35	69	19	168	41	12	18	27	1.87
2271--2449	65	2.8	63	79	7	182	42	13	17	26	1.86
2234--2558	165	2.0	165	89	3	503	41	12	18	27	1.86
2777--3243	124	3.8	123	87	2	603	25	17	24	32	1.97
11656--11737	36	2.4	34	88	8	128	50	0	0	50	1.00
11657--11734	15	5.8	15	68	24	50	50	0	0	50	1.00
12510--12547	18	2.1	18	85	9	51	63	7	0	28	1.23
22212--22284	24	3.0	24	88	4	67	10	15	24	49	1.76
22222--22277	14	4.3	14	82	17	75	8	14	25	51	1.70
22223--22297	24	3.1	23	90	3	96	10	12	21	56	1.66
23278--23352	10	7.7	10	71	21	61	10	12	21	56	1.66
23284--23348	16	4.1	16	91	0	112	9	12	21	56	1.63
23418--23450	16	2.1	16	100	0	66	6	12	24	57	1.57
31599--31632	9	3.7	9	92	4	50	55	11	8	23	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32896--32968	35	2.1	35	97	0	137	41	12	6	39	1.69
35015--35120	46	2.3	46	88	3	151	33	17	18	29	1.95
37141--37210	30	2.3	31	82	2	88	35	21	17	25	1.95
37157--37244	31	2.8	32	81	5	92	32	19	18	29	1.95
37194--37294	32	3.2	32	78	14	111	33	16	16	32	1.92
37454--37519	28	2.4	26	78	14	69	27	19	3	50	1.63
37682--37719	16	2.4	16	86	8	51	34	10	5	50	1.59
45313--45352	21	1.9	21	85	10	55	35	7	5	52	1.51
47203--47356	65	2.4	65	86	3	204	29	17	21	31	1.96
48723--48792	36	1.9	36	85	0	95	31	18	17	32	1.94
50082--50176	32	3.1	31	77	4	93	55	14	11	17	1.68
51002--51060	30	2.0	30	93	0	100	25	33	25	15	1.95
51044--51101	19	3.1	19	92	0	89	25	29	31	13	1.94
51696--51726	14	2.2	14	100	0	62	48	22	12	16	1.80
57603--57654	23	2.3	23	90	3	79	53	13	7	25	1.65
57604--57660	23	2.6	21	84	10	78	52	14	7	26	1.66
59606--59645	21	1.9	21	89	0	62	25	35	25	15	1.94

Tables:   1

The End!