Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006138.1 Hibiscus syriacus cultivar Beakdansim tig00014564_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57028

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8191--8236
23
2.0
23
83
8
58
39
8
0
52
1.33
8573--8626
28
2.0
28
85
10
76
35
1
1
61
1.18
9666--9705
18
2.2
17
86
13
53
67
0
17
15
1.23
9790--9862
31
2.4
30
77
6
74
75
2
5
16
1.11
10808--10845
7
5.7
7
90
9
62
76
0
0
23
0.79
10810--10852
20
2.2
20
91
8
70
79
0
0
20
0.74
10808--10853
13
3.4
14
80
14
53
78
0
0
21
0.76
10810--10852
11
4.3
10
83
16
54
79
0
0
20
0.74
10874--11079
73
2.8
71
75
10
182
43
5
2
49
1.38
10859--11274
39
10.9
38
71
17
206
43
6
3
47
1.46
11285--11339
2
27.5
2
100
0
110
50
0
0
49
1.00
11126--11306
80
2.2
80
82
6
206
44
8
3
43
1.50
11954--13163
84
14.5
84
84
2
1448
22
18
24
33
1.97
11959--13163
168
7.2
168
88
1
1627
22
18
24
33
1.97
14337--14516
88
2.0
88
90
0
279
31
19
16
33
1.94
18074--18173
13
7.9
13
67
20
52
72
1
10
17
1.17
18070--18144
23
3.3
21
75
15
62
70
0
10
18
1.15
18069--18139
32
2.3
31
82
7
81
69
0
12
18
1.20
18133--18205
29
2.5
29
80
12
78
76
2
6
13
1.09
18188--18230
14
3.1
14
83
9
52
76
0
6
16
0.99
18137--18299
32
5.1
30
70
19
82
74
1
8
15
1.14
18118--18234
34
3.3
37
74
15
90
75
1
7
15
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18207--18300
42
2.2
42
79
9
102
73
1
9
15
1.14
19510--19559
24
2.0
27
88
11
79
44
4
4
48
1.40
19532--19737
39
5.5
37
79
10
204
44
6
3
45
1.48
19567--19749
39
4.8
39
81
12
220
43
7
3
45
1.48
19497--19738
112
2.2
112
85
7
314
43
7
3
45
1.48
20370--21589
84
14.6
84
82
2
1339
23
18
24
33
1.97
20392--21589
168
7.2
168
87
2
1565
23
18
24
33
1.97
22782--22961
88
2.0
88
91
0
288
31
19
16
32
1.94
26600--26714
7
15.6
7
72
16
54
75
1
5
17
1.07
26574--26713
22
6.6
20
71
15
72
75
2
5
16
1.09
26578--26650
29
2.5
29
80
12
78
76
2
6
13
1.09
26566--26708
13
10.6
13
69
18
55
74
2
6
16
1.11
26648--26687
14
2.7
15
88
7
64
75
0
7
17
1.03
26635--26686
14
3.7
14
85
7
61
73
0
7
19
1.07
26564--26679
34
3.3
36
77
14
93
74
1
6
17
1.12
26611--26735
56
2.3
56
81
12
143
73
1
8
16
1.14
27991--28191
39
5.2
39
79
12
218
43
7
3
44
1.52
27942--28186
114
2.2
113
83
7
300
42
6
4
46
1.50
27977--28210
114
2.1
111
77
9
240
42
8
4
44
1.55
28926--28977
2
26.0
2
100
0
104
50
0
0
50
1.00
30602--30666
2
32.5
2
100
0
130
49
0
0
50
1.00
32270--32311
2
21.0
2
100
0
84
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35541--35582
2
21.0
2
100
0
84
50
0
0
50
1.00
36629--36663
14
2.4
15
90
4
54
31
2
0
65
1.07
37881--37921
17
2.2
19
87
12
59
53
0
2
43
1.13
41493--41553
23
2.7
23
81
0
77
19
24
26
29
1.99
41986--42026
2
20.5
2
100
0
82
48
0
0
51
1.00
45209--45244
18
2.0
18
100
0
72
50
5
16
27
1.68
47642--47839
63
3.1
63
92
0
306
32
19
21
26
1.97
48525--48585
23
2.7
23
86
0
95
19
27
26
26
1.99
49227--49325
2
49.5
2
100
0
198
49
0
0
50
1.00

Tables:   1

The End!