genome.fa.s6139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006139.1 Hibiscus syriacus cultivar Beakdansim tig00014565_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118571

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1588--1617	12	2.5	12	94	0	51	66	3	0	30	1.07
3052--3095	23	1.9	23	95	0	79	31	25	22	20	1.98
17490--17520	3	10.3	3	100	0	62	67	0	0	32	0.91
34013--34052	18	2.2	18	100	0	80	32	7	17	42	1.77
41947--41998	20	2.5	21	84	3	70	38	19	23	19	1.93
41988--42080	20	4.7	20	90	0	141	25	27	21	24	1.99
42416--42453	20	1.9	20	88	0	58	39	26	18	15	1.91
42472--42555	19	4.7	19	90	10	133	14	21	17	46	1.84
42472--42568	38	2.8	33	84	14	140	13	22	18	45	1.84
42695--42731	14	2.6	14	86	0	56	48	21	0	29	1.50
43793--43852	21	2.9	20	73	11	59	20	13	45	21	1.85
44219--44286	20	3.5	19	82	6	82	38	23	23	14	1.92
44275--44365	14	5.9	14	70	20	65	49	21	16	12	1.78
44259--44370	33	3.4	33	93	1	190	48	21	17	12	1.80
44259--44381	65	1.9	66	89	5	196	47	22	17	12	1.80
44377--44473	19	5.6	19	69	22	88	13	19	20	46	1.83
44399--44457	14	3.9	14	74	20	55	11	16	22	49	1.78
44382--44473	33	2.8	33	96	0	166	13	18	20	47	1.81
44458--44512	20	2.8	19	83	8	65	16	23	23	36	1.94
46359--46412	20	2.7	20	88	0	72	44	20	16	18	1.87
46680--46723	22	2.0	22	90	0	70	18	13	45	22	1.84
46933--47049	61	1.9	61	89	0	180	23	17	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46892--47046	20	7.7	20	82	6	152	25	18	24	32	1.97
46933--47067	61	2.2	61	84	2	173	22	20	23	33	1.97
47117--47157	21	2.0	21	85	0	55	34	29	17	19	1.94
47751--47886	66	2.1	66	91	2	220	21	13	39	25	1.89
49140--49181	14	3.0	14	85	0	57	26	7	28	38	1.82
49753--49802	20	2.5	20	93	0	82	38	28	18	16	1.91
49533--50133	182	3.4	175	79	7	624	41	16	17	25	1.89
50200--50699	199	2.5	199	84	3	659	39	15	15	29	1.88
50200--50723	198	2.6	199	84	3	689	40	14	15	29	1.87
50779--50823	23	2.0	23	95	0	81	37	20	8	33	1.83
52902--53072	90	1.9	90	91	0	279	45	7	11	36	1.67
56910--56969	29	2.0	30	93	6	104	33	6	15	45	1.72
57049--57189	21	6.7	21	84	8	180	22	37	18	21	1.94
60343--60407	25	2.7	25	83	4	80	30	9	29	30	1.88
64459--65216	59	12.7	59	86	4	1036	29	20	11	37	1.88
64652--64681	11	2.7	11	94	0	51	20	16	6	56	1.62
71612--71650	20	2.0	20	84	0	51	23	7	23	46	1.78
71807--71886	21	3.8	21	77	9	72	17	25	33	23	1.96
71827--71888	20	2.9	21	83	7	72	19	25	32	22	1.97
79180--79267	46	1.9	45	82	11	108	27	22	7	42	1.81
79720--80463	59	12.7	59	88	1	1039	29	21	12	36	1.90
81160--81206	20	2.3	20	100	0	94	51	19	6	23	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81570--81594	7	3.6	7	100	0	50	0	52	0	48	1.00
81798--82150	56	6.4	55	86	1	456	36	18	17	26	1.94
87839--87906	23	3.0	23	82	0	73	33	23	13	29	1.93
88085--88235	75	2.0	75	92	0	248	29	22	2	45	1.66
102097--102169	33	2.3	32	86	9	96	41	0	0	58	0.98
102146--102192	24	1.9	24	87	12	69	38	0	0	61	0.96
103785--103918	42	3.2	42	81	4	155	24	33	18	23	1.97
103847--103906	21	2.9	21	72	18	61	28	33	11	26	1.91
103908--103954	21	2.2	21	88	0	67	21	31	29	17	1.96
104412--104501	46	2.0	46	80	8	103	44	11	3	41	1.56
104851--105563	139	5.1	139	86	1	955	31	22	20	25	1.98
104861--105563	277	2.5	277	85	0	985	32	22	19	25	1.98
111592--111623	6	5.3	6	92	0	55	0	18	34	46	1.49
112938--112966	13	2.2	13	100	0	58	13	55	0	31	1.39
116483--116525	13	3.3	13	80	0	50	67	13	2	16	1.33

Tables:   1

The End!