Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006140.1 Hibiscus syriacus cultivar Beakdansim tig00014570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56960

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9019--9092
31
2.4
31
84
8
105
31
27
8
33
1.86
14905--14998
46
2.0
46
87
0
134
22
26
17
34
1.96
15480--15523
18
2.4
18
100
0
88
18
6
11
63
1.48
16490--16520
16
1.9
16
93
0
53
38
22
16
22
1.92
16505--16579
23
3.2
23
76
1
78
44
14
16
25
1.85
17534--17584
2
25.5
2
100
0
102
49
0
0
50
1.00
17599--17668
35
2.0
35
100
0
140
40
8
28
22
1.84
23870--23909
21
2.0
20
85
5
53
37
7
25
30
1.83
23941--24012
19
3.7
19
80
15
85
30
16
18
34
1.93
25078--25180
32
3.2
32
83
0
143
38
18
11
31
1.87
25077--25216
64
2.2
63
83
7
176
38
20
10
30
1.86
26797--26904
31
3.9
27
67
23
71
70
0
7
21
1.17
26777--26960
84
2.2
81
86
10
255
69
3
7
20
1.26
26786--26968
86
2.1
85
92
3
305
69
2
7
20
1.24
26775--26901
22
6.0
21
69
23
72
69
3
6
21
1.25
26872--26963
47
2.0
46
81
16
109
70
2
7
19
1.22
29333--29362
16
1.9
15
93
6
51
73
10
3
13
1.21
31632--31688
23
2.5
23
94
0
96
21
36
22
19
1.95
31647--31706
23
2.9
19
85
9
57
23
33
26
16
1.96
39514--39555
23
1.9
23
85
9
61
35
19
26
19
1.95
42966--43039
31
2.4
31
83
0
85
36
17
10
35
1.85
45951--46000
19
2.6
19
93
0
91
26
22
30
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46958--46991
5
7.0
5
93
6
61
79
0
20
0
0.73
48825--48935
42
2.6
42
89
0
177
24
15
11
48
1.78
53435--53500
16
4.6
14
77
19
64
77
7
15
0
0.98
53446--53490
24
1.9
23
86
4
63
80
6
13
0
0.91
54115--54167
22
2.4
22
93
0
88
35
26
9
28
1.87
55081--55926
106
8.0
106
91
0
1262
34
24
18
23
1.96

Tables:   1

The End!