genome.fa.s6141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006141.1 Hibiscus syriacus cultivar Beakdansim tig00014571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46607

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4041--4083	19	2.3	18	84	7	59	37	2	9	51	1.47
4179--6512	199	11.9	199	94	4	3986	36	14	17	31	1.90
4179--6512	395	5.9	400	93	4	4078	36	14	17	31	1.90
7956--8037	6	13.7	6	82	0	74	37	7	32	21	1.81
7973--8041	3	23.0	3	78	0	75	36	5	33	24	1.80
7956--8037	36	2.3	36	93	0	137	37	7	32	21	1.81
7956--8037	18	4.6	18	81	0	92	37	7	32	21	1.81
7956--8037	12	6.8	12	87	0	101	37	7	32	21	1.81
9244--10550	183	7.1	183	96	1	2261	35	14	16	32	1.90
13007--13071	25	2.6	25	95	0	112	40	12	12	35	1.80
13414--13486	23	3.2	23	88	0	101	34	4	21	39	1.73
13071--14142	490	2.2	489	97	0	2015	39	7	11	40	1.70
13904--13976	23	3.2	23	86	0	92	34	4	20	41	1.72
14335--14407	23	3.2	23	94	0	119	34	4	21	39	1.73
14775--14839	23	2.8	23	92	0	112	33	6	21	38	1.78
13697--15005	431	3.0	431	96	0	2390	40	7	11	39	1.71
18243--18316	29	2.7	26	78	11	76	31	1	24	43	1.63
23080--23204	44	2.9	43	82	7	146	59	1	8	30	1.37
22986--23212	43	5.3	43	75	8	167	56	3	11	28	1.49
25549--25707	64	2.5	64	89	4	232	30	23	17	28	1.97
25685--25727	19	2.4	19	88	7	63	23	32	18	25	1.97
26188--26255	33	2.1	33	91	0	109	26	2	30	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27340--27368	3	10.0	3	92	7	51	31	0	0	68	0.89
36167--36224	30	1.9	30	89	0	89	36	24	29	10	1.88
37096--37149	21	2.6	21	96	0	99	25	16	27	29	1.97
37138--37345	20	10.6	20	71	16	125	17	20	24	37	1.94
37117--37385	41	6.8	40	73	12	157	18	20	24	36	1.95
37272--37325	21	2.6	21	96	0	99	24	14	29	31	1.95
37133--37304	94	1.8	94	86	7	251	19	20	23	36	1.95
37227--37385	62	2.6	61	82	7	198	19	19	25	35	1.95
37481--37519	6	6.5	6	100	0	78	33	51	15	0	1.44
38017--38055	6	6.5	6	100	0	78	0	15	51	33	1.44
38154--38204	22	2.3	22	89	0	84	37	27	15	19	1.92
38190--38266	40	1.9	40	86	7	111	37	19	22	20	1.94
38238--38289	20	2.6	20	96	0	95	42	21	25	11	1.86
44923--44962	14	2.7	15	84	7	55	62	0	0	37	0.95
45027--45073	24	2.0	23	87	4	67	55	2	0	42	1.12
45030--45080	24	2.2	23	82	3	57	54	3	1	39	1.30
45080--45144	23	3.0	22	73	6	69	61	7	6	24	1.46
45177--45211	14	2.5	14	90	0	52	60	0	2	37	1.12
46444--46481	14	2.9	14	88	7	53	57	0	0	42	0.98
46451--46487	17	2.2	17	90	9	58	62	0	0	37	0.96

Tables:   1

The End!