Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006142.1 Hibiscus syriacus cultivar Beakdansim tig00014572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 127956
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:19951 original size:25 final size:24
Alignment explanation
Indices: 19923--19969 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
19913 TCTTTTTAAA
19923 TTATATTAACTATTGTATTTTAATT
1 TTATATTAACTATT-TATTTTAATT
* * *
19948 TTATTTTGATTATTTATTTTAA
1 TTATATTAACTATTTATTTTAA
19970 AAGAGAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (24 bp):
TTATATTAACTATTTATTTTAATT
Found at i:20588 original size:18 final size:18
Alignment explanation
Indices: 20565--20599 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
20555 CCGCTATTAG
20565 TGAACCGGCCAGAACCGC
1 TGAACCGGCCAGAACCGC
*
20583 TGAACCGGTCAGAACCG
1 TGAACCGGCCAGAACCG
20600 TTCGAACCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.29, T:0.09
Consensus pattern (18 bp):
TGAACCGGCCAGAACCGC
Found at i:21460 original size:17 final size:17
Alignment explanation
Indices: 21438--21470 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21428 GCATGACCGG
21438 TTCGCTAACCGGTCCGA
1 TTCGCTAACCGGTCCGA
*
21455 TTCGCTAATCGGTCCG
1 TTCGCTAACCGGTCCG
21471 GTTCTGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.33, G:0.24, T:0.27
Consensus pattern (17 bp):
TTCGCTAACCGGTCCGA
Found at i:22036 original size:16 final size:16
Alignment explanation
Indices: 22017--22048 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22007 TTGATATTTA
22017 ATGATTTAGTAATGAT
1 ATGATTTAGTAATGAT
22033 ATGATTTAGTAATGAT
1 ATGATTTAGTAATGAT
22049 TAATAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (16 bp):
ATGATTTAGTAATGAT
Found at i:22060 original size:24 final size:24
Alignment explanation
Indices: 22015--22185 Score: 86
Period size: 24 Copynumber: 6.9 Consensus size: 24
22005 ATTTGATATT
*
22015 TAATGATTTAGTAATGATATGATTTAG
1 TAATGA-TTAATAAT-A-ATGATTTAG
22042 TAATGATTAATAATAATGATTTA-
1 TAATGATTAATAATAATGATTTAG
* *
22065 T--T-ATTAATATTTAATGATTTGATAT
1 TAATGATTAATA-ATAATGA-TT--TAG
* *
22090 TAATGATT--TAGTAATGATTATTAA
1 TAATGATTAATAATAATGA-T-TTAG
*
22114 TAATTATTTAATAATGATATGATTTAG
1 TAATGA-TTAATAAT-A-ATGATTTAG
* *
22141 TAATGATTACTAATAATGA-TTAC
1 TAATGATTAATAATAATGATTTAG
* *
22164 TAATAATTATTTAATAATGATT
1 TAATGATTA-ATAATAATGATT
22186 GGATACTAAT
Statistics
Matches: 116, Mismatches: 12, Indels: 34
0.72 0.07 0.21
Matches are distributed among these distances:
20 7 0.06
21 7 0.06
22 2 0.02
23 12 0.10
24 30 0.26
25 14 0.12
26 17 0.15
27 18 0.16
28 5 0.04
29 4 0.03
ACGTcount: A:0.42, C:0.01, G:0.11, T:0.47
Consensus pattern (24 bp):
TAATGATTAATAATAATGATTTAG
Found at i:22066 original size:59 final size:59
Alignment explanation
Indices: 22010--22123 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 59
22000 AAATTATTTG
22010 ATATTTAATGATTT-AGTAATGATATGATTTAGTAATGATTAATAATAATGATTTATTATTA
1 ATATTTAATGATTTGA-T-ATGA-ATGATTTAGTAATGATTAATAATAATGATTTATTATTA
* * *
22071 ATATTTAATGATTTGATATTAATGATTTAGTAATGATTATTAATAATTATTTA
1 ATATTTAATGATTTGATATGAATGATTTAGTAATGATTAATAATAATGATTTA
22124 ATAATGATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
59 30 0.61
60 3 0.06
61 15 0.31
62 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (59 bp):
ATATTTAATGATTTGATATGAATGATTTAGTAATGATTAATAATAATGATTTATTATTA
Found at i:22126 original size:53 final size:52
Alignment explanation
Indices: 22064--22212 Score: 132
Period size: 53 Copynumber: 2.9 Consensus size: 52
22054 ATAATGATTT
*
22064 ATTA-TTAATATTTAATGATTTGATATTAATGATTTAGTAATGATTATTAATA
1 ATTATTTAATA-TTAATGATTTGATACTAATGATTTAGTAATGATTATTAATA
* * * *
22116 ATTATTT-A-A-TAATGATATGATTTAGTAATGATTACTAATAATGATTACTAATA
1 ATTATTTAATATTAATGATTTGA--TACTAATGATT--TAGTAATGATTATTAATA
* **
22169 ATTATTT-A-A-TAATGATTGGATACTAATGATTTAGTGTTGATTAT
1 ATTATTTAATATTAATGATTTGATACTAATGATTTAGTAATGATTAT
22213 AGTACTGAGA
Statistics
Matches: 81, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
49 19 0.23
51 21 0.26
52 5 0.06
53 36 0.44
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (52 bp):
ATTATTTAATATTAATGATTTGATACTAATGATTTAGTAATGATTATTAATA
Found at i:23229 original size:24 final size:24
Alignment explanation
Indices: 23202--23292 Score: 130
Period size: 24 Copynumber: 3.8 Consensus size: 24
23192 TTTAAATATT
*
23202 TAATCATTATTAAATAATTATTAG
1 TAATCATTATTAAATCATTATTAG
*
23226 TAATCATTATTAAATCATTATTAA
1 TAATCATTATTAAATCATTATTAG
* *
23250 TAATTATTA-TAATTCATTATTAG
1 TAATCATTATTAAATCATTATTAG
*
23273 TAATCATTACTAAATCATTA
1 TAATCATTATTAAATCATTA
23293 GTATCAAATC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
23 20 0.34
24 39 0.66
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (24 bp):
TAATCATTATTAAATCATTATTAG
Found at i:23257 original size:34 final size:35
Alignment explanation
Indices: 23198--23292 Score: 122
Period size: 34 Copynumber: 2.7 Consensus size: 35
23188 TGTATTTAAA
*
23198 TATTTAATCATTATTAAATAATTATTAGTAATCAT
1 TATTAAATCATTATTAAATAATTATTAGTAATCAT
23233 TATTAAATCATTATT-AATAATTATTA-TAATTCAT
1 TATTAAATCATTATTAAATAATTATTAGTAA-TCAT
* *
23267 TATTAGTAATCATTACTAAATCATTA
1 TATTA--AATCATTATTAAATAATTA
23293 GTATCAAATC
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
33 3 0.06
34 20 0.38
35 14 0.26
36 9 0.17
37 7 0.13
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.47
Consensus pattern (35 bp):
TATTAAATCATTATTAAATAATTATTAGTAATCAT
Found at i:24805 original size:18 final size:18
Alignment explanation
Indices: 24782--24816 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24772 AGGGATTATC
*
24782 AGTGGTCCTTCGGGACAT
1 AGTGGTCATTCGGGACAT
24800 AGTGGTCATTCGGGACA
1 AGTGGTCATTCGGGACA
24817 AATATTCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.26
Consensus pattern (18 bp):
AGTGGTCATTCGGGACAT
Found at i:26412 original size:26 final size:26
Alignment explanation
Indices: 26369--26438 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 26
26359 TGAGAAAAGG
* *
26369 ATAAT-AAAAATATTAATATACAAAT
1 ATAATAAAAAATATAAATAAACAAAT
*
26394 ATTAATAAAAAATA-AAATAAATAAAT
1 A-TAATAAAAAATATAAATAAACAAAT
*
26420 ATATATAAAACAATGTAAA
1 ATA-ATAAAA-AATATAAA
26439 AAGAAATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
25 3 0.08
26 20 0.56
27 10 0.28
28 3 0.08
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (26 bp):
ATAATAAAAAATATAAATAAACAAAT
Found at i:27525 original size:26 final size:28
Alignment explanation
Indices: 27493--27549 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 28
27483 TCTCCAACAA
*
27493 CATTATCTCACG-ATTTT-TTTTCATAC
1 CATTATCTCAAGAATTTTCTTTTCATAC
27519 CATTATCTCAAGAAATTTTCTTTTCATAC
1 CATTATCTCAAG-AATTTTCTTTTCATAC
27548 CA
1 CA
27550 ATAGCAGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 11 0.41
28 5 0.19
29 11 0.41
ACGTcount: A:0.28, C:0.23, G:0.04, T:0.46
Consensus pattern (28 bp):
CATTATCTCAAGAATTTTCTTTTCATAC
Found at i:30885 original size:47 final size:47
Alignment explanation
Indices: 30815--30905 Score: 155
Period size: 47 Copynumber: 1.9 Consensus size: 47
30805 AGTTGATATT
*
30815 TTGATGTCAAAGCCATCATGTTGAAAGATTTGTATGAGTTATTGAGC
1 TTGATGTCAAAGCCATCAGGTTGAAAGATTTGTATGAGTTATTGAGC
* *
30862 TTGATGTCAAAGCCGTCAGGTTGAAAGATTTGTATGATTTATTG
1 TTGATGTCAAAGCCATCAGGTTGAAAGATTTGTATGAGTTATTG
30906 TCCTAAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (47 bp):
TTGATGTCAAAGCCATCAGGTTGAAAGATTTGTATGAGTTATTGAGC
Found at i:40652 original size:13 final size:13
Alignment explanation
Indices: 40634--40658 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40624 AAAAACGGAT
40634 GGTATCGATACCG
1 GGTATCGATACCG
40647 GGTATCGATACC
1 GGTATCGATACC
40659 CTATCTAGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (13 bp):
GGTATCGATACCG
Found at i:40695 original size:20 final size:20
Alignment explanation
Indices: 40672--40709 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
40662 TCTAGGCTAT
40672 AAGAACAATATCGATACTTG
1 AAGAACAATATCGATACTTG
*
40692 AAGAACATTATCGATACT
1 AAGAACAATATCGATACT
40710 AACAAAGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.26
Consensus pattern (20 bp):
AAGAACAATATCGATACTTG
Found at i:46558 original size:23 final size:21
Alignment explanation
Indices: 46526--46567 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
46516 CGGATTCAAA
46526 ACCAAAAAGGTAGTATCGATATC
1 ACCAAAAAGG--GTATCGATATC
*
46549 ACCAATAAGGGTATCGATA
1 ACCAAAAAGGGTATCGATA
46568 CTATTATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
23 9 0.50
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (21 bp):
ACCAAAAAGGGTATCGATATC
Found at i:47699 original size:22 final size:22
Alignment explanation
Indices: 47671--47716 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
47661 CACCTTTGAT
47671 GGTTCTAAGTTGGGAGGAAAAC
1 GGTTCTAAGTTGGGAGGAAAAC
47693 GGTTCTAAGTTGGGAGGAAAAC
1 GGTTCTAAGTTGGGAGGAAAAC
47715 GG
1 GG
47717 AAAATATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.39, T:0.22
Consensus pattern (22 bp):
GGTTCTAAGTTGGGAGGAAAAC
Found at i:48511 original size:23 final size:23
Alignment explanation
Indices: 48467--48511 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
48457 AACATATTAT
**
48467 GTAGCGCTTATATAATGTAATAA
1 GTAGCGCTTATATAATAAAATAA
48490 GTAGCGCTTATATAATAAAATA
1 GTAGCGCTTATATAATAAAATA
48512 TGCATTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (23 bp):
GTAGCGCTTATATAATAAAATAA
Found at i:48574 original size:87 final size:87
Alignment explanation
Indices: 48428--48592 Score: 258
Period size: 87 Copynumber: 1.9 Consensus size: 87
48418 ATGTTATATT
* * *
48428 ATTTAACCGAAAATATTATCAAGTACAATAACATATTATGTAGCGCTTATATAATGTAATAAGTA
1 ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAACACTTATATAATGTAATAAGTA
* *
48493 GCGCTTATATAATAAAATATGC
66 ACACTTATATAATAAAATATGC
* * *
48515 ATTTAACTGGAAATATTATCAAGTACAATAACATATTAGGTAACACTTATATAATGTAATAGGTA
1 ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAACACTTATATAATGTAATAAGTA
48580 ACACTTATATAAT
66 ACACTTATATAAT
48593 GTAATAGGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (87 bp):
ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAACACTTATATAATGTAATAAGTA
ACACTTATATAATAAAATATGC
Found at i:48615 original size:23 final size:23
Alignment explanation
Indices: 48551--48602 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
48541 AATAACATAT
48551 TAGGTAACACTTATATAATGTAA
1 TAGGTAACACTTATATAATGTAA
48574 TAGGTAACACTTATATAATGTAA
1 TAGGTAACACTTATATAATGTAA
48597 TAGGTA
1 TAGGTA
48603 GTGTTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (23 bp):
TAGGTAACACTTATATAATGTAA
Found at i:48666 original size:87 final size:86
Alignment explanation
Indices: 48574--48786 Score: 338
Period size: 87 Copynumber: 2.4 Consensus size: 86
48564 TATAATGTAA
* * *
48574 TAGGTAACACTTATATAATGTAATAGGTAGTGTTTATATAATAAAATAGGCATTTAACC-GAAAA
1 TAGGTAGCGCTTATATAATGTAATAGGTAG-GCTTATATAATAAAATAGGCATTTAACCAG-AAA
*
48638 TATTATCAAGTACAATAACATGT
64 TATTATCAAGTACAATAACATAT
48661 TAGGTAGCGCTTATATAATGTAATAGGTACGGCTTATATAATAAAATAGGCATTTAACCAGAAAT
1 TAGGTAGCGCTTATATAATGTAATAGGTA-GGCTTATATAATAAAATAGGCATTTAACCAGAAAT
48726 ATTATCAAGTACAATAACATAT
65 ATTATCAAGTACAATAACATAT
*
48748 TATGTAGCGCTTATATAATGTAATAGGTAGCGCTTATAT
1 TAGGTAGCGCTTATATAATGTAATAGGTAG-GCTTATAT
48787 TTGACTTATT
Statistics
Matches: 118, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
86 1 0.01
87 115 0.97
88 2 0.02
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.33
Consensus pattern (86 bp):
TAGGTAGCGCTTATATAATGTAATAGGTAGGCTTATATAATAAAATAGGCATTTAACCAGAAATA
TTATCAAGTACAATAACATAT
Found at i:48708 original size:23 final size:23
Alignment explanation
Indices: 48661--48710 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
48651 AATAACATGT
**
48661 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
48684 TAGGTA-CGGCTTATATAATAAAA
1 TAGGTAGC-GCTTATATAATAAAA
48707 TAGG
1 TAGG
48711 CATTTAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:48710 original size:110 final size:110
Alignment explanation
Indices: 48471--48702 Score: 358
Period size: 110 Copynumber: 2.1 Consensus size: 110
48461 TATTATGTAG
* * * *
48471 CGCTTATATAATGTAATAAGTAGCGCTTATATAATAAAATATGCATTTAACTGGAAATATTATCA
1 CGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGCATTTAACCGAAAATATTATCA
48536 AGTACAATAACATATTAGGTAACACTTATATAATGTAATAGGTAA
66 AGTACAATAACATATTAGGTAACACTTATATAATGTAATAGGTAA
* * *
48581 CACTTATATAATGTAATAGGTAGTGTTTATATAATAAAATAGGCATTTAACCGAAAATATTATCA
1 CGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGCATTTAACCGAAAATATTATCA
* * *
48646 AGTACAATAACATGTTAGGTAGCGCTTATATAATGTAATAGGT-A
66 AGTACAATAACATATTAGGTAACACTTATATAATGTAATAGGTAA
48690 CGGCTTATATAAT
1 C-GCTTATATAAT
48703 AAAATAGGCA
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
109 2 0.02
110 108 0.98
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (110 bp):
CGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGCATTTAACCGAAAATATTATCA
AGTACAATAACATATTAGGTAACACTTATATAATGTAATAGGTAA
Found at i:48763 original size:197 final size:197
Alignment explanation
Indices: 48428--48786 Score: 603
Period size: 197 Copynumber: 1.8 Consensus size: 197
48418 ATGTTATATT
*
48428 ATTTAACCGAAAATATTATCAAGTACAATAACATATTATGTAGCGCTTATATAATGTAATAAGTA
1 ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAAGTA
* **
48493 GCGCTTATATAATAAAATATGCATTTAACTGGAAATATTATCAAGTACAATAACATATTAGGTAA
66 GCGCTTATATAATAAAATAGGCATTTAACCAGAAATATTATCAAGTACAATAACATATTAGGTAA
48558 CACTTATATAATGTAATAGGTAACACTTATATAATGTAATAGGTAGTGTTTATATAATAAAATAG
131 CACTTATATAATGTAATAGGTAACACTTATATAATGTAATAGGTAGTGTTTATATAATAAAATAG
48623 GC
196 GC
* *
48625 ATTTAACCGAAAATATTATCAAGTACAATAACATGTTAGGTAGCGCTTATATAATGTAATAGGTA
1 ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAAGTA
*
48690 -CGGCTTATATAATAAAATAGGCATTTAACCAGAAATATTATCAAGTACAATAACATATTATGTA
66 GC-GCTTATATAATAAAATAGGCATTTAACCAGAAATATTATCAAGTACAATAACATATTAGGTA
* * * *
48754 GCGCTTATATAATGTAATAGGTAGCGCTTATAT
130 ACACTTATATAATGTAATAGGTAACACTTATAT
48787 TTGACTTATT
Statistics
Matches: 150, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
196 1 0.01
197 149 0.99
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (197 bp):
ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAAGTA
GCGCTTATATAATAAAATAGGCATTTAACCAGAAATATTATCAAGTACAATAACATATTAGGTAA
CACTTATATAATGTAATAGGTAACACTTATATAATGTAATAGGTAGTGTTTATATAATAAAATAG
GC
Found at i:49230 original size:199 final size:197
Alignment explanation
Indices: 48804--49246 Score: 595
Period size: 199 Copynumber: 2.2 Consensus size: 197
48794 ATTTTCTAAC
* * ** *
48804 TAAACCGGTATATTTATACCAGTAACATTACAAATTTACTTATTACATTATAATTATCGGTTTCG
1 TAAACCGGTATATTTATACCGGTTACATTGTAAATTTACATATTACATTATAATTATCGGTTTCG
* *
48869 ATATTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGAATCTTGTTTGGTATT
66 ATATTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGAATCTCGTTTGGCATT
* *
48934 CATTCTGGAAAAAAGTATCGACACAAACTTAAAACGTGTCGATACATTATGTAGACATATTTTCT
131 CATTCTGGAAAAAAGTATCGACACAAACTTAAAACGTGTCGATACATTATGTAGACATATTCTAT
48999 CA
196 CA
* * * *
49001 TAAAACCGGTATATTTCTACTAGG-TACATTGTAAATTTACCTATTACATTGTAATTATCGGTTT
1 T-AAACCGGTATATTTATAC-CGGTTACATTGTAAATTTACATATTACATTATAATTATCGGTTT
* *
49065 CGATATTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGCGTGCATCTCGTTTGG
64 CGATATTTTTGGGATCGATACAATTT--TAAATGTATCGACACTTTATGCGTGAATCTCGTTTGG
* *** ** *
49129 CATTCATTCTGGACAAAATGTATCGACAC-TTTTTAAATTTGTGTCGATACATTATGTTGACATA
127 CATTCATTCTGGA-AAAAAGTATCGACACAAACTTAAA-ACGTGTCGATACATTATGTAGACATA
49193 TTCTATCA
190 TTCTATCA
* *
49201 TAAATCGGTATATTTATACCGGTTACATTGTAAATCTACATATTAC
1 TAAACCGGTATATTTATACCGGTTACATTGTAAATTTACATATTAC
49247 TTTTTAAATT
Statistics
Matches: 213, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
197 4 0.02
198 75 0.35
199 90 0.42
200 44 0.21
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (197 bp):
TAAACCGGTATATTTATACCGGTTACATTGTAAATTTACATATTACATTATAATTATCGGTTTCG
ATATTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGAATCTCGTTTGGCATT
CATTCTGGAAAAAAGTATCGACACAAACTTAAAACGTGTCGATACATTATGTAGACATATTCTAT
CA
Found at i:49736 original size:124 final size:125
Alignment explanation
Indices: 49513--49785 Score: 395
Period size: 124 Copynumber: 2.2 Consensus size: 125
49503 ACCGGTAAAA
* * * *
49513 AATAACAAAACCGATAGCGCTTTTACCGGTTTTGTTAAGAAACCCGGTAAAATGTCAAAATAATA
1 AATAACAAAACCGGTAGCGTTTTTACCGGTTTTGTTAAGAAACCCGATAAAATGCCAAAATAATA
** * *
49578 ACAAAACCGGTAGAAATAATGATGTTTTCAGTAATTTTTA-CGATTTTGTTATACACAAC
66 ACAAAACCAATAGAAATAATGATGTTTTCAGTAATTTTTATCAATTTTATTATACACAAC
*
49637 AATAACAAAACCGGTAGCGTTTTTACCGGTTTTGTTTAGAAACCCGATAAAATGCCAAAATAATA
1 AATAACAAAACCGGTAGCGTTTTTACCGGTTTTGTTAAGAAACCCGATAAAATGCCAAAATAATA
* ** *
49702 ACAAAATCAATAGAAATAATGATGTTTTTGGTAATTTTTATCAATTTTATTATGCACAAC
66 ACAAAACCAATAGAAATAATGATGTTTTCAGTAATTTTTATCAATTTTATTATACACAAC
* * *
49762 AATAATAAAATCGGTACCGTTTTT
1 AATAACAAAACCGGTAGCGTTTTT
49786 TTAACAGTAT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
124 95 0.72
125 37 0.28
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (125 bp):
AATAACAAAACCGGTAGCGTTTTTACCGGTTTTGTTAAGAAACCCGATAAAATGCCAAAATAATA
ACAAAACCAATAGAAATAATGATGTTTTCAGTAATTTTTATCAATTTTATTATACACAAC
Found at i:53800 original size:14 final size:14
Alignment explanation
Indices: 53781--53807 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
53771 CATGTTCGAG
53781 TTTAAACCCTAAAC
1 TTTAAACCCTAAAC
53795 TTTAAACCCTAAA
1 TTTAAACCCTAAA
53808 AATTAAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.30
Consensus pattern (14 bp):
TTTAAACCCTAAAC
Found at i:60973 original size:4 final size:4
Alignment explanation
Indices: 60958--61001 Score: 79
Period size: 4 Copynumber: 11.0 Consensus size: 4
60948 ATTATTATTA
*
60958 TTTC TCTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
61002 AATTTTTCAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTC
Found at i:63271 original size:24 final size:24
Alignment explanation
Indices: 63249--63327 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 24
63239 TATGTGGTCA
63249 TTCGGGACAAATTCTACGCGGTC-C
1 TTCGGGACAAATTCTACGCGG-CAC
* *
63273 TTCGGGATAAATTTTTACGCGGCAC
1 TTCGGGACAAA-TTCTACGCGGCAC
*
63298 TTCGGTG-CAAAACTCTACGCGGCAC
1 TTCGG-GAC-AAATTCTACGCGGCAC
63323 TTCGG
1 TTCGG
63328 TGTAATTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
24 11 0.24
25 31 0.67
26 4 0.09
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (24 bp):
TTCGGGACAAATTCTACGCGGCAC
Found at i:69880 original size:30 final size:31
Alignment explanation
Indices: 69826--69886 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
69816 ATTATATGAA
69826 TTATGTGATAAAGGTATGGAAAATGAAATGT
1 TTATGTGATAAAGGTATGGAAAATGAAATGT
*
69857 TTATGTGATAAAGGTAT-GAAAATGATATGT
1 TTATGTGATAAAGGTATGGAAAATGAAATGT
69887 CTATACGATA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 12 0.41
31 17 0.59
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (31 bp):
TTATGTGATAAAGGTATGGAAAATGAAATGT
Found at i:70115 original size:24 final size:25
Alignment explanation
Indices: 70088--70135 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
70078 TTTTATATGT
70088 GGTCATTCGGGACAAA-TTCTACGA
1 GGTCATTCGGGACAAATTTCTACGA
* *
70112 GGTCCTTCGGGATAAATTTCTACG
1 GGTCATTCGGGACAAATTTCTACG
70136 CGGCAATTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (25 bp):
GGTCATTCGGGACAAATTTCTACGA
Found at i:72231 original size:20 final size:20
Alignment explanation
Indices: 72206--72244 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
72196 ATGCACCCCA
72206 AGTGTA-CCGATGCACCCTGC
1 AGTGTATCC-ATGCACCCTGC
72226 AGTGTATCCATGCACCCTG
1 AGTGTATCCATGCACCCTG
72245 GCTGCTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.21, C:0.33, G:0.23, T:0.23
Consensus pattern (20 bp):
AGTGTATCCATGCACCCTGC
Found at i:73074 original size:24 final size:24
Alignment explanation
Indices: 73047--73096 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
73037 TAGTGGTTGA
73047 TTTAATGGTTGT-TTGAACTTTATT
1 TTTAATGG-TGTATTGAACTTTATT
* *
73071 TTTAATGGTGTATTTAAGTTTATT
1 TTTAATGGTGTATTGAACTTTATT
73095 TT
1 TT
73097 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (24 bp):
TTTAATGGTGTATTGAACTTTATT
Found at i:79652 original size:11 final size:12
Alignment explanation
Indices: 79627--79652 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79617 AAAATTTAAG
79627 TTTTTCTTTATT
1 TTTTTCTTTATT
79639 TTTTTCTTTATT
1 TTTTTCTTTATT
79651 TT
1 TT
79653 ATTTTGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTCTTTATT
Found at i:79992 original size:19 final size:21
Alignment explanation
Indices: 79955--79997 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
79945 TAACTTTTTC
* *
79955 TTTTCTCTTTCTTTATTAA-T
1 TTTTCTATTTCATTATTAACT
79975 TTTTCTATTTCATT-TTAACT
1 TTTTCTATTTCATTATTAACT
79995 TTT
1 TTT
79998 ACTTTTTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTCTATTTCATTATTAACT
Found at i:83225 original size:24 final size:24
Alignment explanation
Indices: 83198--83247 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
83188 TGGTGGTTGA
83198 TTTAATGGTTGT-TTGAACTTTATT
1 TTTAATGG-TGTATTGAACTTTATT
* *
83222 TTTAATGGTGTATTTAAGTTTATT
1 TTTAATGGTGTATTGAACTTTATT
83246 TT
1 TT
83248 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (24 bp):
TTTAATGGTGTATTGAACTTTATT
Found at i:84768 original size:20 final size:20
Alignment explanation
Indices: 84740--84815 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
84730 AGGGTGTCAA
* *
84740 AGTGTATCCATACACCCTGC
1 AGTGCATCCATGCACCCTGC
**
84760 AGTGCATCCATGCATTCTGC
1 AGTGCATCCATGCACCCTGC
* * **
84780 AGTGTATCGATGCACCCTTT
1 AGTGCATCCATGCACCCTGC
84800 AGTGCATCCATGCACC
1 AGTGCATCCATGCACC
84816 TGTGACTGCT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (20 bp):
AGTGCATCCATGCACCCTGC
Found at i:85047 original size:20 final size:22
Alignment explanation
Indices: 85009--85048 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
84999 TTATTGCAGA
85009 AAAATCATCCCCAAACGACTCC
1 AAAATCATCCCCAAACGACTCC
85031 AAAA-CATCCCC-AACGACT
1 AAAATCATCCCCAAACGACT
85049 ATATATGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.42, C:0.40, G:0.05, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGACTCC
Found at i:87982 original size:136 final size:136
Alignment explanation
Indices: 87805--88165 Score: 453
Period size: 136 Copynumber: 2.6 Consensus size: 136
87795 GCTTAGCGAA
* * *
87805 AGATCAGGTCATCCTGCCTACTCCCCTCTGGAAGCGCTCGACATGAAATCTATCTTCCCTGCCTA
1 AGATCAGGTCAT-CTGCTTACTCCCCTCTAGAAGCGCTCGACATGAACTCTATCTTCCCTGCCTA
* *
87870 CT-CCACACATTAAAGCGCTCAGCGTGATATTAAAACACCTTGCCTACTCCACACATTGAAGCGC
65 CTCCCA-ACATTGAAGCGCTCAGCGTGATATTAAAACACCCTGCCTACTCCACACATTGAAGCGC
*
87934 TCGGCATC
129 TCGACATC
* *
87942 AGATTAGGTCATCTGCTTACTCCCCTCTAGAAGCGCTCGACATGAACTCTATCTCCCCTGCCTAC
1 AGATCAGGTCATCTGCTTACTCCCCTCTAGAAGCGCTCGACATGAACTCTATCTTCCCTGCCTAC
* * * * * ** *
88007 TCCCAACGTTGAAGCACTTAGCGTGATATTAAAGCACCCTGTCTACTCCACATGTTGGAGCGCTC
66 TCCCAACATTGAAGCGCTCAGCGTGATATTAAAACACCCTGCCTACTCCACACATTGAAGCGCTC
88072 GACATC
131 GACATC
** *
88078 AGATCAAATCATTCTG-TCTACT-CCCT-TATGAAAGCGCTCGACATGAACTCTGTC-TCCCATG
1 AGATCAGGTCA-TCTGCT-TACTCCCCTCTA-G-AAGCGCTCGACATGAACTCTATCTTCCC-TG
88139 CCTACTCCCAACATTGAAGCGCTCAGC
61 CCTACTCCCAACATTGAAGCGCTCAGC
88166 ATGAACACTA
Statistics
Matches: 194, Mismatches: 24, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
135 2 0.01
136 122 0.63
137 70 0.36
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (136 bp):
AGATCAGGTCATCTGCTTACTCCCCTCTAGAAGCGCTCGACATGAACTCTATCTTCCCTGCCTAC
TCCCAACATTGAAGCGCTCAGCGTGATATTAAAACACCCTGCCTACTCCACACATTGAAGCGCTC
GACATC
Found at i:88008 original size:45 final size:44
Alignment explanation
Indices: 87817--88010 Score: 108
Period size: 46 Copynumber: 4.3 Consensus size: 44
87807 ATCAGGTCAT
* * *
87817 CCTGCCTACTCCCCTCTGGAAGCGCTCGACATGAAATCTATCTTC
1 CCTGCCTACTCCCCTCTAGAAGCGCTCGACATGAGAT-TATCTCC
* * ***
87862 CCTGCCTACTCCACACAT-TA-AAGCGCTC-AGCGTGATATTAAAACAC
1 CCTGCCTACTCC-C-C-TCTAGAAGCGCTCGA-CATGAGATTATCTC-C
* * * * * * ** *
87908 CTTGCCTACTCCACACATTGAAGCGCTCGGCATCAGATTAGGTCA
1 CCTGCCTACTCCCCTC-TAGAAGCGCTCGACATGAGATTATCTCC
* *
87953 TCTGCTTACTCCCCTCTAGAAGCGCTCGACATGA-ACTCTATCTCC
1 CCTGCCTACTCCCCTCTAGAAGCGCTCGACATGAGA-T-TATCTCC
87998 CCTGCCTACTCCC
1 CCTGCCTACTCCC
88011 AACGTTGAAG
Statistics
Matches: 106, Mismatches: 32, Indels: 22
0.66 0.20 0.14
Matches are distributed among these distances:
43 1 0.01
44 17 0.16
45 42 0.40
46 43 0.41
47 2 0.02
48 1 0.01
ACGTcount: A:0.23, C:0.37, G:0.15, T:0.25
Consensus pattern (44 bp):
CCTGCCTACTCCCCTCTAGAAGCGCTCGACATGAGATTATCTCC
Found at i:88169 original size:46 final size:46
Alignment explanation
Indices: 88108--88215 Score: 137
Period size: 46 Copynumber: 2.3 Consensus size: 46
88098 CTCCCTTATG
* *
88108 AAAGCGCTC-GACATGAACTCTGTCTCCCATGCCTACTCCCAACATT
1 AAAGCGCTCAG-CATGAACACTATCTCCCATGCCTACTCCCAACATT
* * * *
88154 GAAGCGCTCAGCATGAACACTATCTCCCCTTCCTACTCCCAACGTT
1 AAAGCGCTCAGCATGAACACTATCTCCCATGCCTACTCCCAACATT
*
88200 AAAGCACTCAGCATGA
1 AAAGCGCTCAGCATGA
88216 TATTAAAGCA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 52 0.98
47 1 0.02
ACGTcount: A:0.28, C:0.36, G:0.14, T:0.22
Consensus pattern (46 bp):
AAAGCGCTCAGCATGAACACTATCTCCCATGCCTACTCCCAACATT
Found at i:95946 original size:31 final size:31
Alignment explanation
Indices: 95911--95978 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
95901 TCAAAAAACA
95911 TAAGATA-G-TCACTTTCGTTTTTTTATTTAAT
1 TAAGATATGATCACTTTCG--TTTTTATTTAAT
*
95942 TAAGATATGATCGCTTTCGTTTTTATTTAAT
1 TAAGATATGATCACTTTCGTTTTTATTTAAT
95973 TAAGAT
1 TAAGAT
95979 GTGGTCATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
31 25 0.74
32 1 0.03
33 8 0.24
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (31 bp):
TAAGATATGATCACTTTCGTTTTTATTTAAT
Found at i:96149 original size:27 final size:27
Alignment explanation
Indices: 96119--96182 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
96109 CATAAAGTAT
96119 ATATTTTTAAATGAAAATAAAAATAAA
1 ATATTTTTAAATGAAAATAAAAATAAA
* ** *
96146 ATATTTTTAAATTAAGTTAATAATAAA
1 ATATTTTTAAATGAAAATAAAAATAAA
*
96173 ATATATTTAA
1 ATATTTTTAA
96183 TAAGTTAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (27 bp):
ATATTTTTAAATGAAAATAAAAATAAA
Found at i:96192 original size:25 final size:25
Alignment explanation
Indices: 96140--96232 Score: 104
Period size: 25 Copynumber: 3.7 Consensus size: 25
96130 TGAAAATAAA
*
96140 AATAAAATATTTTTAAATTAAGTTAAT
1 AATAAAATATATTT-AA-TAAGTTAAT
96167 AATAAAATATATTTAATAAGTTAAT
1 AATAAAATATATTTAATAAGTTAAT
96192 -ATAAAAATATATTT--TAAGTTAAT
1 AAT-AAAATATATTTAATAAGTTAAT
96215 ATATATAAA-ATATTTAAT
1 A-ATA-AAATATATTTAAT
96233 TGTTGTTAAC
Statistics
Matches: 59, Mismatches: 1, Indels: 13
0.81 0.01 0.18
Matches are distributed among these distances:
23 9 0.15
24 9 0.15
25 25 0.42
26 3 0.05
27 13 0.22
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (25 bp):
AATAAAATATATTTAATAAGTTAAT
Found at i:96923 original size:24 final size:24
Alignment explanation
Indices: 96896--96944 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
96886 TGTTTATAAG
* *
96896 ATAATATTTATTTAAA-ATTATTTA
1 ATAATAATTATGTAAATATT-TTTA
96920 ATAATAATTATGTAAATATTTTTA
1 ATAATAATTATGTAAATATTTTTA
96944 A
1 A
96945 AGAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATAATAATTATGTAAATATTTTTA
Found at i:98493 original size:22 final size:22
Alignment explanation
Indices: 98442--98499 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
98432 ATTTAATAAA
*
98442 ATTTTAAAAATA-AAATAAATG
1 ATTTAAAAAATATAAATAAATG
98463 ATTAATAAAAAATATAAATAACAT-
1 ATT--TAAAAAATATAAATAA-ATG
*
98487 ATTTAAAATATAT
1 ATTTAAAAAATAT
98500 CATAATTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
21 3 0.10
22 9 0.29
23 8 0.26
24 9 0.29
25 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (22 bp):
ATTTAAAAAATATAAATAAATG
Found at i:99408 original size:38 final size:38
Alignment explanation
Indices: 99327--99405 Score: 151
Period size: 38 Copynumber: 2.1 Consensus size: 38
99317 AATATATATA
99327 TAAATGTAAAAAGAAATAAAAAATATTAAAATTAGGAG
1 TAAATGTAAAAAGAAATAAAAAATATTAAAATTAGGAG
99365 TAAATGTAAAAAGAAATAAAAAATATTAAAATTAGGA-
1 TAAATGTAAAAAGAAATAAAAAATATTAAAATTAGGAG
99402 TAAA
1 TAAA
99406 ATGAAATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 4 0.10
38 37 0.90
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (38 bp):
TAAATGTAAAAAGAAATAAAAAATATTAAAATTAGGAG
Found at i:99780 original size:33 final size:33
Alignment explanation
Indices: 99723--99871 Score: 246
Period size: 33 Copynumber: 4.5 Consensus size: 33
99713 AGTCATACTT
99723 GGACTCAAA-ATGCTTCGGTTTTAGTGTTTCAATA
1 GGACTCAAATATG-TT-GGTTTTAGTGTTTCAATA
99757 GGACTCAAATATGTTGGTTTTAGTGTTTCAATA
1 GGACTCAAATATGTTGGTTTTAGTGTTTCAATA
*
99790 GGACTCAAATATGTTGGTTTTAGTTTTTCAATA
1 GGACTCAAATATGTTGGTTTTAGTGTTTCAATA
*
99823 GGACTCAAATACGTTGGTTTTAGTGTTTCAATA
1 GGACTCAAATATGTTGGTTTTAGTGTTTCAATA
*
99856 GGACTCAAATACGTTG
1 GGACTCAAATATGTTG
99872 ATTTATTTTC
Statistics
Matches: 111, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
33 97 0.87
34 11 0.10
35 3 0.03
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.40
Consensus pattern (33 bp):
GGACTCAAATATGTTGGTTTTAGTGTTTCAATA
Found at i:100668 original size:84 final size:84
Alignment explanation
Indices: 100323--100921 Score: 443
Period size: 84 Copynumber: 7.2 Consensus size: 84
100313 CTGAATGGAA
* * *
100323 TCGAACTCGAAGGTCTTT-G---GCAGATAACCCTTCTTGCCTT-GAGCTATGCTGCAAATGATA
1 TCGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCGACTTAG-GTTATGCTGCAAATGAT-
* * *
100383 GTGCTTTTGAGCTGAGTGGAG
64 GTGCCTTGGAGCTGAGTGTAG
* * * * * * * * **
100404 TTGAACTCGAATGTCTTTGGTTTGGTAAATAGCCCTTCTCGACTTAAGTTATCCTATAAATGATG
1 TCGAACTCGAAGGTCTTTGG-TTAGCAGATAACCCTTCTCGACTTAGGTTATGCTGCAAATGATG
* * *
100469 TGCTTTTGAGCTGAGCGTAG
65 TGCCTTGGAGCTGAGTGTAG
* * * * *
100489 TCAAACTCGAAGGTCTTT-GTTGGCATATAACCCTTCTAGCCTT-GAGTTATGCTGCAAATGATG
1 TCGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCGACTTAG-GTTATGCTGCAAATGATG
* * * * *
100552 TACCCTGGAGATGAGTATAA
65 TGCCTTGGAGCTGAGTGTAG
* * * *
100572 TCGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCAACTTAGGCTATGCTGCAAATGCTAT
1 TCGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCGACTTAGGTTATGCTGCAAATGATGT
* **
100637 GCCTTAGAGCTGAGCATAG
66 GCCTTGGAGCTGAGTGTAG
** * * * * * * * *
100656 TTAAACTTGAAGGTATTTTGGTGA-CAAATAACCCTTTTAGCCTT-GAGTTATGCTGTAAATGAT
1 TCGAACTCGAAGGT-CTTTGGTTAGCAGATAACCCTTCTCGACTTAG-GTTATGCTGCAAATGAT
* * * *
100719 GCGCCCTCGAAGCTGAGTGTAA
64 GTG-CCTTGGAGCTGAGTGTAG
* * * * * *
100741 TTGAACTTGAGGGTCTTTGG--A--AGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCGACTTAGGTTATGCTGCAAATGATGT
*
100802 GCCTTGGAGCTTAGTGTAG
66 GCCTTGGAGCTGAGTGTAG
* * * * * *
100821 TCGAACTCGAAGGTATTTAGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATAT
1 TCGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCGACTTAGGTTATGCTGCAAATGATGT
* *
100886 GCCTTGGAGGTGAGCGTAG
66 GCCTTGGAGCTGAGTGTAG
*
100905 TCAAACTCGAAGG-CTTT
1 TCGAACTCGAAGGTCTTT
100922 TGGTGGGCAC
Statistics
Matches: 400, Mismatches: 101, Indels: 32
0.75 0.19 0.06
Matches are distributed among these distances:
80 29 0.07
81 47 0.12
82 2 0.00
83 67 0.17
84 160 0.40
85 66 0.17
86 29 0.07
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (84 bp):
TCGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTCTCGACTTAGGTTATGCTGCAAATGATGT
GCCTTGGAGCTGAGTGTAG
Found at i:100854 original size:165 final size:164
Alignment explanation
Indices: 100424--100883 Score: 521
Period size: 165 Copynumber: 2.8 Consensus size: 164
100414 ATGTCTTTGG
* * ** * *
100424 TTTGGTAA-ATAGCCCTTCTCGACTTAAGTTATCCTATAAATGATGTGCTTTTGAGCTGAGCGTA
1 TTTGGTAAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGTA
* * * *
100488 GTCAAACTCGAAGGTCTTTGTTGGCATATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT
66 GTCAAACTCGAAGGTATTTGTTGGCAAATAACCCTTTTAGCCTTGAGTTATGCTGCAAATGATGC
*
100553 ACCCTGGAGATGAGTATAATCGAACTCGAAGGTC
131 ACCCTGAAGATGAGTATAATCGAACTCGAAGGTC
* * * * *
100587 TTTGGTTAGCAGATAACCCTTCTCAACTTAGGCTATGCTGCAAATGCTATGCCTTAGAGCTGAGC
1 TTTGG-TA--AGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGC
* * * * * *
100652 ATAGTTAAACTTGAAGGTATTTTGGTGACAAATAACCCTTTTAGCCTTGAGTTATGCTGTAAATG
63 GTAGTCAAACTCGAAGGTA-TTTGTTGGCAAATAACCCTTTTAGCCTTGAGTTATGCTGCAAATG
* * * * * *
100717 ATGCGCCCTCGAAGCTGAGTGTAATTGAACTTGAGGGTC
127 ATGCACCCT-GAAGATGAGTATAATCGAACTCGAAGGTC
* * *
100756 TTTGG-AAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTTAGTGTA
1 TTTGGTAAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGTA
* * * *
100820 GTCGAACTCGAAGGTATTTAGTTGGCAGATAACCCTTCTT-GACTTAAGTTATGCTGCAAATGAT
66 GTCAAACTCGAAGGTATTT-GTTGGCAAATAACCCTT-TTAGCCTTGAGTTATGCTGCAAATGAT
100884 ATGCCTTGGA
Statistics
Matches: 243, Mismatches: 46, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
163 5 0.02
164 5 0.02
165 97 0.40
166 3 0.01
167 58 0.24
168 47 0.19
169 28 0.12
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (164 bp):
TTTGGTAAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGTA
GTCAAACTCGAAGGTATTTGTTGGCAAATAACCCTTTTAGCCTTGAGTTATGCTGCAAATGATGC
ACCCTGAAGATGAGTATAATCGAACTCGAAGGTC
Found at i:101205 original size:110 final size:110
Alignment explanation
Indices: 100996--101646 Score: 987
Period size: 110 Copynumber: 6.0 Consensus size: 110
100986 AGAAAAATAT
* * *
100996 TTGTGTTGTTTCGAGGCCAATATCCTTCAGC-GTGAAGTTGAAATTGA--CT--ATGAAACTGGA
1 TTGTGTTGTCTCGAGTCCAATATCCTTC-GCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAA
** *
101056 AAGTTGTTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAGC
65 AAGTTGTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
** *
101102 TTGTGTTGTCTAAAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGGAACTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
* *
101167 AGTTATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTAAGC
66 AGTTGTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
* **
101212 TTGTGTTGTCTCGAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTTTAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
* *
101277 AGTTGTTTGTTGACAGTCAGTCACCCCTTCGATGTGAAGTTGAGC
66 AGTTGTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
* *
101322 TTGTGTTGTCTCGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAATTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
*
101387 AGTTTTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
66 AGTTGTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
101432 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
* * *
101497 AGTTGTTTGTTGACAGTCAGCCGCCCTTTCGCTGTGAAGTTGAGT
66 AGTTGTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
* * * *
101542 TTGTGTTGCCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGAATATGAATGAAACTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
*
101607 AGTTGTTTGTTGACAGTCA--CG--CCTTCACTGTGAAGTTGAG
66 AGTTGTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAG
101647 AAACAACCAT
Statistics
Matches: 499, Mismatches: 41, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
105 2 0.00
106 57 0.11
108 4 0.01
110 436 0.87
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (110 bp):
TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
AGTTGTTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
Found at i:105418 original size:14 final size:13
Alignment explanation
Indices: 105396--105429 Score: 59
Period size: 14 Copynumber: 2.5 Consensus size: 13
105386 AAGAAAAAAA
105396 TAATAAATAATAT
1 TAATAAATAATAT
105409 TAATATAATAATAT
1 TAATA-AATAATAT
105423 TAATAAA
1 TAATAAA
105430 AAATGAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATAAATAATAT
Found at i:105448 original size:26 final size:26
Alignment explanation
Indices: 105410--105472 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
105400 AAATAATATT
*
105410 AATATAATAATATTAAT-AAAAAATGA
1 AATATAATAATATAAATGAAAAAA-GA
*
105436 AATAT-ATATATATAAATGTAAAAAGA
1 AATATAATA-ATATAAATGAAAAAAGA
105462 AATA-AA-AATAT
1 AATATAATAATAT
105473 TAAAATTAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 4 0.12
25 4 0.12
26 19 0.59
27 5 0.16
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (26 bp):
AATATAATAATATAAATGAAAAAAGA
Found at i:105844 original size:34 final size:33
Alignment explanation
Indices: 105805--105888 Score: 102
Period size: 33 Copynumber: 2.5 Consensus size: 33
105795 GAGTCCTACT
* *
105805 TGGACTCAAAATGC-TTCGGTTTTAGTGTTTTAA
1 TGGACTCAAAATACGTT-GGTTTTAGTGTTTCAA
105838 TAGGACTC-AAATACGTTGGTTTTAGTGTTTCAA
1 T-GGACTCAAAATACGTTGGTTTTAGTGTTTCAA
105871 TGGTACTC-AAATACGTTG
1 TGG-ACTCAAAATACGTTG
105889 ATTTATTTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
32 2 0.04
33 36 0.78
34 8 0.17
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.39
Consensus pattern (33 bp):
TGGACTCAAAATACGTTGGTTTTAGTGTTTCAA
Found at i:105863 original size:33 final size:33
Alignment explanation
Indices: 105822--105888 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
105812 AAAATGCTTC
*
105822 GGTTTTAGTGTTTTAATAGG-ACTCAAATACGTT
1 GGTTTTAGTGTTTCAAT-GGTACTCAAATACGTT
105855 GGTTTTAGTGTTTCAATGGTACTCAAATACGTT
1 GGTTTTAGTGTTTCAATGGTACTCAAATACGTT
105888 G
1 G
105889 ATTTATTTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.42
Consensus pattern (33 bp):
GGTTTTAGTGTTTCAATGGTACTCAAATACGTT
Found at i:105955 original size:3 final size:3
Alignment explanation
Indices: 105942--105988 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
105932 TGCCTACAAA
105942 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AA- ATAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT A-AT AAT
105987 AA
1 AA
105989 AATGATTTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 3 0.08
3 33 0.82
4 4 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:106532 original size:31 final size:31
Alignment explanation
Indices: 106497--106591 Score: 74
Period size: 31 Copynumber: 3.1 Consensus size: 31
106487 TTACCATTTT
106497 GTAACTTTTAATAGTCGAGAGACTTAATAAA
1 GTAACTTTTAATAGTCGAGAGACTTAATAAA
* * * ***
106528 GTAACATTCT-ATAGTTGA-ATGAC--CATTTT
1 GTAAC-TTTTAATAGTCGAGA-GACTTAATAAA
106557 GTAACTTTTAATAGTCGATG-GACTTAATAAA
1 GTAACTTTTAATAGTCGA-GAGACTTAATAAA
106588 GTAA
1 GTAA
106592 TATCCTATAG
Statistics
Matches: 45, Mismatches: 12, Indels: 14
0.63 0.17 0.20
Matches are distributed among these distances:
28 3 0.07
29 17 0.38
30 1 0.02
31 21 0.47
32 3 0.07
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (31 bp):
GTAACTTTTAATAGTCGAGAGACTTAATAAA
Found at i:106556 original size:60 final size:60
Alignment explanation
Indices: 106489--106624 Score: 195
Period size: 60 Copynumber: 2.3 Consensus size: 60
106479 TAGGCGGGTT
* * *
106489 ACCATTTTGTAACTTTTAATAGTCGA-GAGACTTAATAAAGTAACATTCTATAGTTGAATG
1 ACCATTTTGTAACTTTTAATAGTCGATG-GACTTAATAAAGTAACATCCTATAGTCGAAGG
* *
106549 ACCATTTTGTAACTTTTAATAGTCGATGGACTTAATAAAGTAATATCCTATAGTCGGAGG
1 ACCATTTTGTAACTTTTAATAGTCGATGGACTTAATAAAGTAACATCCTATAGTCGAAGG
106609 ACCATTTGTGT-ACTTT
1 ACCATTT-TGTAACTTT
106625 ACCCTAGATA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
60 65 0.94
61 4 0.06
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (60 bp):
ACCATTTTGTAACTTTTAATAGTCGATGGACTTAATAAAGTAACATCCTATAGTCGAAGG
Found at i:106915 original size:100 final size:101
Alignment explanation
Indices: 106742--106947 Score: 333
Period size: 100 Copynumber: 2.0 Consensus size: 101
106732 CGTTTTAGCT
*
106742 TCATTTTGGTTACTCATTATAGTTAAAAATTAATGGTAATGTTGATGTGTCACCATAAGGTACTA
1 TCATTTTGGTTACTCATTATAGTTAAAAATTAATGGTAATGTTGATGTGTCACCATAAGGTACAA
** *
106807 TCATGTCATCATT-ATTTTTTTTAAATTCCATGTCA
66 TCATGTCATCATTAATTTTTTAAAAATTCAATGTCA
* *
106842 TCATTTTGGTTACTCGTTATCGTTAAAAATTAATGGTAATGTTGATGTGTCACCATAAGGTACAA
1 TCATTTTGGTTACTCATTATAGTTAAAAATTAATGGTAATGTTGATGTGTCACCATAAGGTACAA
106907 TCATGTCATCATTGAAATTTTTTAAAAATTCAATGTCA
66 TCATGTCATCATT--AATTTTTTAAAAATTCAATGTCA
106945 TCA
1 TCA
106948 GTTCTGTTAA
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
100 75 0.77
103 22 0.23
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.42
Consensus pattern (101 bp):
TCATTTTGGTTACTCATTATAGTTAAAAATTAATGGTAATGTTGATGTGTCACCATAAGGTACAA
TCATGTCATCATTAATTTTTTAAAAATTCAATGTCA
Found at i:107285 original size:26 final size:25
Alignment explanation
Indices: 107256--107319 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
107246 ATTTTAAATC
107256 AAATTCAATTTAAACTAAATC-AGTTT
1 AAATT-AATTTAAAC-AAATCAAGTTT
* *
107282 AAATTAAATATTAATCGAATCAAGTTT
1 AAATT-AAT-TTAAACAAATCAAGTTT
107309 AAA-TAATTTAA
1 AAATTAATTTAA
107320 TTCAACTCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 13 0.39
27 13 0.39
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.38
Consensus pattern (25 bp):
AAATTAATTTAAACAAATCAAGTTT
Found at i:115755 original size:124 final size:122
Alignment explanation
Indices: 115499--115818 Score: 374
Period size: 124 Copynumber: 2.6 Consensus size: 122
115489 CATTAGTGTC
* * * * * *
115499 GGTGCTGATCCAACTCCTTATTTGATGGAATCGAGC--GTGTTGAATAAGTTATTCTCATTATTA
1 GGTGCTGATCCAACTCCTTATGTGATGGAATCGAACAAG-GTTGAACAAGTTCTTCTAATTATGA
* * * * * * *
115562 ACTTCTCCTCTTGGAAACGTTGACCCAACTCTTTTTTTATGGAATCAAACCTAGTGCT
65 ACTTCTTCTCTCGAAAACGTTGACCCAACTCTTATATGATGGAATCAAACCTAGTGAT
* *
115620 GGTGTTGATCCAACTACTTATGTGATGGAATCGAACAAAGGTTGAACAAGTTCTTCTAATTATGA
1 GGTGCTGATCCAACTCCTTATGTGATGGAATCGAAC-AAGGTTGAACAAGTTCTTCTAATTATGA
* * * * *
115685 ACTACTTCTCTCGAAAATGTTGACCTAACTTCTTATATGATGGAATCAAACGTAGTTAT
65 ACTTCTTCTCTCGAAAACGTTGACCCAAC-TCTTATATGATGGAATCAAACCTAGTGAT
* * * *
115744 GGTGCTGATCCAACTCCTTATGTGATAGAATCGAATAATGGTTGAACAATTTCTTCTTATTATGA
1 GGTGCTGATCCAACTCCTTATGTGATGGAATCGAACAA-GGTTGAACAAGTTCTTCTAATTATGA
115809 ACTTCTTCTC
65 ACTTCTTCTC
115819 CCTCATCGGA
Statistics
Matches: 167, Mismatches: 27, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
121 32 0.19
123 46 0.28
124 89 0.53
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (122 bp):
GGTGCTGATCCAACTCCTTATGTGATGGAATCGAACAAGGTTGAACAAGTTCTTCTAATTATGAA
CTTCTTCTCTCGAAAACGTTGACCCAACTCTTATATGATGGAATCAAACCTAGTGAT
Found at i:126926 original size:21 final size:21
Alignment explanation
Indices: 126885--126926 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
126875 TCTACTTCAA
**
126885 TTTATTATATTATGTTTAATT
1 TTTATTATATTATGTAGAATT
*
126906 TTTATTTTATTATGTAGAATT
1 TTTATTATATTATGTAGAATT
126927 ACAATAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (21 bp):
TTTATTATATTATGTAGAATT
Done.