Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006143.1 Hibiscus syriacus cultivar Beakdansim tig00014578_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58502

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
257--306
21
2.3
21
82
3
55
24
36
6
34
1.80
914--1007
24
3.8
24
78
10
100
45
9
2
42
1.48
914--1019
13
8.7
11
78
13
86
46
10
1
41
1.49
1044--1074
16
2.0
16
93
6
55
41
19
0
38
1.51
4078--4172
47
2.0
46
97
2
181
20
23
14
42
1.89
8510--8547
20
1.9
20
84
10
51
55
5
5
34
1.45
21674--21757
42
2.0
42
90
4
134
26
30
13
29
1.93
29876--29905
15
2.0
15
100
0
60
60
0
20
20
1.37
29879--29913
15
2.3
15
90
0
52
65
0
17
17
1.27
29991--30114
8
14.5
8
71
15
52
74
0
5
19
1.07
29993--30060
20
3.5
20
75
18
65
76
1
5
16
1.05
30030--30067
20
1.9
20
84
10
51
73
2
2
21
1.07
30056--30140
36
2.5
32
77
15
91
68
0
3
28
1.06
30063--30118
27
2.0
30
82
10
73
71
0
5
23
1.06
30084--30191
43
2.7
37
76
19
108
64
1
1
31
1.14
30203--30248
23
2.0
24
83
12
60
67
4
8
19
1.35
30517--30621
37
2.8
37
85
0
129
30
12
14
42
1.82
31164--31794
105
6.0
105
91
3
934
21
17
26
33
1.96
31993--32068
36
2.1
36
90
0
116
40
15
21
22
1.90
31968--32285
104
3.1
104
93
1
525
36
12
20
30
1.89
32409--32516
36
3.0
36
73
2
110
44
13
13
27
1.82
32356--32531
72
2.4
74
83
7
198
42
13
17
27
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33672--34208
183
2.9
183
95
0
959
30
21
20
27
1.98
38106--38135
15
2.0
15
100
0
60
60
0
20
20
1.37
38109--38143
15
2.3
15
90
0
52
65
0
17
17
1.27
38222--38351
9
13.4
9
68
20
50
74
0
5
19
1.05
38223--38312
21
4.4
21
69
18
64
76
1
5
16
1.03
38175--38351
50
3.6
48
73
17
130
72
1
7
18
1.13
38170--38304
53
2.5
50
73
21
114
73
2
7
17
1.16
38287--38365
39
2.0
37
85
11
104
69
0
3
26
1.05
38274--38357
30
2.7
31
80
7
100
72
1
3
22
1.07
38318--38415
48
2.1
46
83
10
121
62
1
2
34
1.14
38445--38490
23
2.0
24
83
12
60
67
4
8
19
1.35
38758--38862
37
2.8
37
83
0
129
29
13
14
42
1.83
43416--43478
32
2.0
33
87
6
94
11
7
41
39
1.70
43920--43991
11
6.5
11
70
17
60
26
5
2
65
1.28
43924--44005
9
7.9
10
70
20
53
26
6
2
64
1.29
44069--44131
27
2.3
26
78
5
72
17
11
4
66
1.39
44231--44280
16
3.1
16
75
13
50
20
4
6
70
1.25
46701--46740
21
1.9
21
85
10
55
47
10
30
12
1.74
47767--48107
74
4.6
74
75
8
287
37
18
21
22
1.94
48147--48245
36
2.8
36
79
3
110
38
20
22
19
1.94
55645--55686
21
2.0
21
86
9
59
30
11
21
35
1.90

Tables:   1

The End!