Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006145.1 Hibiscus syriacus cultivar Beakdansim tig00014586_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46949

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170--752
177
3.3
179
94
2
1016
32
16
15
34
1.91
2249--2295
24
2.0
24
95
0
85
17
36
10
36
1.84
2253--2295
12
3.6
12
90
0
68
16
37
11
34
1.85
3741--5011
195
6.5
198
96
2
2372
32
16
15
35
1.90
3741--5011
392
3.2
395
96
2
2393
32
16
15
35
1.90
5133--5181
19
2.6
19
90
6
73
55
10
4
30
1.52
6956--7021
33
2.0
33
90
0
105
22
48
0
28
1.51
7055--7096
21
2.0
21
85
0
57
14
30
16
38
1.89
9330--9376
20
2.4
19
80
19
69
21
17
10
51
1.75
9497--9542
20
2.3
20
89
10
76
17
17
10
54
1.70
14796--14857
27
2.3
27
83
5
90
50
0
4
45
1.23
19176--19206
2
15.5
2
100
0
62
48
0
51
0
1.00
25664--25706
21
2.0
21
100
0
86
41
18
16
23
1.89
28172--28209
16
2.2
18
86
9
53
52
10
10
26
1.68
28611--28651
21
1.9
21
85
5
55
58
4
2
34
1.32
28606--28651
22
2.1
21
84
4
56
63
4
2
30
1.26
39600--39632
14
2.4
14
89
0
57
57
6
3
33
1.38
43439--43521
43
1.9
44
82
7
107
26
14
7
51
1.68

Tables:   1

The End!