Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006146.1 Hibiscus syriacus cultivar Beakdansim tig00014593_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96998

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4143--4244
53
2.0
51
81
11
118
39
0
17
42
1.56
6914--6942
10
2.9
10
100
0
58
51
17
10
20
1.74
7839--7879
14
2.9
14
100
0
82
56
7
21
14
1.63
8770--8948
45
4.1
45
86
2
222
38
16
20
24
1.93
18251--18300
25
2.0
25
96
0
91
42
12
4
42
1.60
25190--25238
3
16.0
3
83
12
64
34
0
2
63
1.06
26814--26858
22
2.0
22
86
8
63
42
0
0
57
0.98
26908--26957
23
2.0
26
85
11
70
46
2
0
52
1.12
27935--28022
39
2.3
38
90
2
131
7
17
40
34
1.78
29781--29851
3
23.0
3
82
5
88
38
0
1
60
1.06
29786--29859
12
6.4
12
76
16
52
40
0
1
58
1.07
31176--31257
15
5.0
15
73
17
65
21
2
1
74
1.01
31191--31252
3
21.7
3
76
18
53
24
0
1
74
0.91
31195--31259
33
1.9
34
87
9
98
24
0
1
73
0.91
31257--31299
20
2.2
20
91
0
68
62
0
0
37
0.95
31560--31596
16
2.2
17
90
4
58
43
0
0
56
0.99
31546--31596
26
2.0
26
84
7
68
43
0
0
56
0.99
36422--36471
2
25.0
2
100
0
100
50
0
0
50
1.00
38626--38848
114
2.0
114
90
0
356
33
14
20
30
1.93
41220--41294
22
3.4
22
92
0
132
34
12
13
40
1.81
42146--43008
75
11.4
76
94
1
1441
22
20
21
35
1.96
42146--43008
227
3.8
227
93
1
1437
22
20
21
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43140--43207
3
22.0
3
82
5
82
36
0
1
61
1.05
43142--43215
15
5.6
14
73
20
70
39
0
1
59
1.06
43134--43215
18
4.6
18
75
14
71
39
0
1
59
1.05
44445--44528
16
5.5
15
73
15
57
22
2
1
73
1.01
44458--44525
3
23.7
3
78
16
65
25
0
1
73
0.92
44533--44575
20
2.2
19
91
8
68
60
0
0
39
0.97
44837--44873
16
2.2
17
90
4
58
43
0
0
56
0.99
44823--44873
26
2.0
26
84
7
68
43
0
0
56
0.99
50120--50144
13
1.9
13
100
0
50
0
0
28
72
0.86
58428--58457
10
3.0
10
95
0
51
53
0
0
46
1.00
65561--65638
2
40.0
2
94
5
142
50
0
0
50
1.00
65846--65900
20
2.7
21
88
8
87
40
10
20
29
1.86
67008--67032
3
8.3
3
100
0
50
0
32
0
68
0.90
76791--76842
18
2.9
17
86
8
68
34
0
19
46
1.50
78536--78577
21
2.0
21
90
9
68
35
9
9
45
1.69
78739--78777
21
1.9
20
89
5
60
33
10
12
43
1.77
78460--79548
199
5.5
199
86
3
1393
39
13
13
32
1.85
79585--79661
20
3.8
20
80
0
82
44
12
14
28
1.82
79822--79876
20
2.8
20
94
0
92
36
16
16
30
1.91
82198--82741
180
3.0
178
79
4
626
38
13
13
35
1.84
82758--83076
128
2.5
125
81
6
374
42
11
13
33
1.80
83074--83679
226
2.7
226
91
1
952
31
16
13
38
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86848--86889
20
2.0
21
81
13
50
61
4
4
28
1.36
91348--91416
37
1.9
34
91
8
111
17
21
17
43
1.88

Tables:   1

The End!