genome.fa.s6147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006147.1 Hibiscus syriacus cultivar Beakdansim tig00014597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64397

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1930--2055	48	2.8	44	84	9	171	30	23	7	38	1.83
2163--2291	59	2.2	59	87	0	177	28	24	17	28	1.98
3834--3885	22	2.5	19	77	17	50	40	13	1	44	1.55
8837--8867	6	5.2	6	100	0	62	64	0	0	35	0.94
9103--9133	16	1.9	16	93	0	53	80	6	0	12	0.89
9102--9172	37	1.9	37	88	5	108	71	2	9	15	1.23
9239--9282	19	2.4	19	88	3	63	72	0	6	20	1.07
14354--14440	31	2.8	30	83	10	104	42	0	3	54	1.17
24878--24921	18	2.4	18	92	0	70	13	40	22	22	1.89
28601--28639	2	19.5	2	100	0	78	48	0	0	51	1.00
28672--28704	13	2.4	14	90	5	50	36	0	9	54	1.32
28610--28769	73	2.2	73	96	2	295	41	7	8	41	1.64
31854--31975	50	2.4	50	82	2	156	17	37	25	19	1.93
32106--32142	19	1.9	19	88	0	56	27	29	0	43	1.55
32263--32484	111	2.0	111	97	0	417	36	8	10	45	1.69
38209--38332	51	2.4	51	81	2	124	24	27	31	16	1.97
39017--39053	19	1.9	19	94	0	65	32	29	16	21	1.95
39082--39232	20	7.4	20	74	11	137	33	24	18	23	1.97
39082--39252	41	4.2	41	90	2	247	35	23	18	22	1.95
41829--41897	20	3.5	20	91	0	111	34	26	23	15	1.95
41979--42052	32	2.3	33	86	6	98	10	20	24	44	1.83
42044--42112	20	3.5	19	86	7	84	17	18	26	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42617--42719	21	4.9	21	77	4	91	22	34	18	24	1.96
42617--42739	42	2.9	42	75	4	122	23	35	17	23	1.95
43062--43096	12	2.9	12	100	0	70	17	17	0	65	1.27
44137--44198	14	4.3	14	79	6	70	37	0	16	46	1.47
44139--44193	29	1.9	29	85	3	76	34	0	18	47	1.49
44394--44509	20	5.8	19	78	12	108	30	17	20	31	1.95
44393--44509	40	2.9	39	87	5	162	29	17	20	31	1.96
44393--44509	60	2.0	60	87	3	173	29	17	20	31	1.96
44480--44762	140	2.0	140	96	0	521	42	15	13	29	1.85
44815--44855	18	2.3	18	86	0	64	17	2	29	51	1.58
47114--47160	24	2.0	24	95	0	85	34	17	21	27	1.95
47975--48145	20	8.4	20	82	7	177	23	17	26	32	1.97
47975--48145	81	2.1	82	90	3	265	23	17	26	32	1.97
48171--48248	21	3.8	20	77	11	86	38	19	21	20	1.94
48192--48260	20	3.4	20	76	11	86	40	20	20	18	1.92
48170--48260	41	2.2	41	98	0	173	38	20	20	19	1.94
48170--48276	41	2.6	41	92	0	160	38	18	22	20	1.94
48291--48329	19	2.1	19	85	0	51	20	17	25	35	1.95
49616--49650	18	1.9	18	94	0	61	65	0	0	34	0.93
50386--50446	20	3.0	21	83	7	81	39	32	11	16	1.84
53885--53926	20	2.0	20	90	4	66	35	30	14	19	1.91
54641--54682	22	1.9	22	85	9	59	42	0	2	54	1.13

Tables:   1

The End!