Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006148.1 Hibiscus syriacus cultivar Beakdansim tig00014601_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98816

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4197--4240
20
2.3
18
88
7
61
63
0
2
34
1.07
4246--4286
15
2.7
15
84
0
55
63
0
0
36
0.95
4383--4412
2
15.0
2
92
0
51
50
0
3
46
1.18
4418--4479
23
2.6
23
74
5
61
61
9
4
24
1.47
5809--5864
12
4.4
14
91
8
70
60
0
0
39
0.97
5821--5864
3
14.0
3
95
4
70
63
0
0
36
0.95
6038--6238
89
2.3
89
89
0
303
32
18
16
31
1.94
6279--6472
75
2.6
76
86
1
273
33
19
19
28
1.96
6404--6517
45
2.5
45
86
2
147
33
19
21
26
1.97
6451--6592
75
1.9
74
86
4
205
33
19
21
24
1.97
6339--6684
120
2.9
121
90
2
545
33
18
20
27
1.96
6525--6637
45
2.5
46
87
7
160
31
20
22
25
1.98
6579--6758
76
2.4
76
95
0
315
35
18
18
27
1.95
7226--7324
22
4.5
22
86
5
146
36
14
13
36
1.85
10365--10500
72
1.9
72
87
3
202
35
22
19
22
1.96
11588--11628
19
2.2
19
86
8
57
36
14
2
46
1.58
12576--12643
36
1.9
34
85
11
93
54
8
16
20
1.68
12625--12658
12
2.8
12
86
4
50
67
0
8
23
1.18
12637--12690
22
2.5
22
88
5
76
62
7
11
18
1.50
12612--12721
47
2.3
46
79
13
125
60
7
12
20
1.56
15917--15956
2
20.0
2
100
0
80
50
0
0
50
1.00
15962--16029
23
3.0
22
72
8
66
63
5
5
25
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17367--17430
12
5.2
13
90
7
75
62
0
1
35
1.05
17379--17430
3
17.0
3
88
11
79
65
0
1
32
1.04
17388--17436
12
4.1
12
94
5
66
67
0
4
28
1.09
19759--19806
14
3.7
13
81
10
53
52
0
2
45
1.12
40967--41000
18
1.9
18
88
5
52
58
23
0
17
1.38
42762--42798
17
2.1
19
85
10
51
59
0
0
40
0.97
43088--43157
32
2.3
32
82
7
92
28
7
1
62
1.30
43080--43156
32
2.4
32
82
8
86
27
9
1
62
1.33
45504--45571
20
3.3
20
89
2
100
35
20
14
29
1.93
45504--45592
20
4.4
19
83
7
88
33
19
14
32
1.92
48351--48594
122
2.0
122
95
0
434
38
10
15
35
1.82
50709--50738
12
2.5
12
94
0
51
43
20
16
20
1.88
60225--60259
16
2.1
17
89
5
54
20
5
14
60
1.54
64821--64859
2
19.5
2
100
0
78
48
0
0
51
1.00
69953--70284
168
2.0
169
96
3
616
46
17
13
22
1.83
70615--70644
4
7.5
4
100
0
60
76
0
0
23
0.78
76936--76966
14
2.3
13
94
5
53
9
0
29
61
1.28
82124--82204
41
2.0
41
92
0
135
23
7
14
54
1.66
82124--82224
41
2.5
41
86
3
132
23
8
13
53
1.68
82796--82868
31
2.4
29
82
15
85
24
12
9
53
1.68
86110--86138
14
2.1
14
93
6
51
34
0
0
65
0.93
86112--86155
23
2.0
22
86
4
61
40
2
0
56
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88530--88583
21
2.6
21
84
0
63
35
14
14
35
1.88
95300--95357
30
1.9
30
85
0
80
48
12
6
32
1.67
95837--95870
14
2.5
13
86
9
50
58
0
0
41
0.98
96569--96647
33
2.3
34
85
8
99
43
7
5
44
1.54
96597--96720
36
3.5
35
71
18
103
41
8
7
42
1.64
97321--98463
165
7.0
163
81
7
993
25
20
24
30
1.99
97286--98447
84
14.2
83
76
7
1025
25
20
24
30
1.99
97321--98463
408
2.8
404
84
5
1351
25
20
24
30
1.99

Tables:   1

The End!