genome.fa.s6149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006149.1 Hibiscus syriacus cultivar Beakdansim tig00014608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60335

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5019--5068	23	2.2	23	88	0	73	42	10	8	40	1.68
5025--5075	23	2.2	23	82	0	57	45	13	7	33	1.73
10486--10765	142	2.0	142	92	0	470	30	21	16	30	1.96
10743--10812	20	3.5	20	73	11	70	34	27	17	21	1.95
10737--10833	41	2.4	41	89	0	140	39	25	14	20	1.91
10737--10854	21	5.8	20	73	9	87	39	24	15	20	1.91
11295--11403	19	5.4	19	80	13	110	31	28	5	34	1.80
14636--14723	37	2.4	37	86	1	124	44	2	39	13	1.57
14709--14778	3	22.3	3	79	13	61	68	0	28	2	1.04
14752--14778	10	2.7	10	100	0	54	62	0	37	0	0.95
15006--15045	19	2.2	19	86	4	55	52	2	7	37	1.43
15367--15409	22	2.0	22	85	0	59	9	6	16	67	1.40
15998--16063	33	2.0	33	100	0	132	21	12	24	42	1.86
17422--17449	2	14.0	2	100	0	56	50	0	0	50	1.00
18945--18981	3	12.3	3	100	0	74	32	0	0	67	0.91
19999--20143	61	2.4	61	91	2	238	26	13	18	40	1.88
20558--20606	24	2.0	24	84	7	64	40	0	20	38	1.53
20560--20614	24	2.3	24	78	12	60	45	0	18	36	1.49
20594--20632	18	2.2	18	90	0	60	56	0	15	28	1.40
22949--22996	13	3.7	13	91	0	78	18	47	16	16	1.82
22962--23021	31	1.9	31	89	0	93	20	46	18	15	1.84
22992--23021	13	2.3	13	94	0	51	20	46	20	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25494--25583	23	3.8	23	86	1	99	28	13	18	38	1.89
25503--25593	24	3.9	24	88	1	96	29	12	19	38	1.88
25662--25736	35	2.1	35	92	0	123	9	28	29	33	1.88
27712--27759	13	3.7	13	91	0	78	18	47	16	16	1.82
27725--27784	31	1.9	31	89	0	93	20	46	18	15	1.84
27755--27784	13	2.3	13	94	0	51	20	46	20	13	1.83
30257--30346	23	3.8	23	86	1	99	28	13	18	38	1.89
30266--30356	24	3.9	24	88	1	96	29	12	19	38	1.88
30424--30498	35	2.1	35	92	0	123	9	28	29	33	1.88
41554--41588	16	2.2	16	100	0	70	25	0	14	60	1.35
49275--49331	29	2.0	29	85	0	78	40	12	22	24	1.88
55214--55239	9	2.9	9	100	0	52	46	0	23	30	1.53
57709--57747	2	19.5	2	100	0	78	51	0	0	48	1.00

Tables:   1

The End!