genome.fa.s6150.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006150.1 Hibiscus syriacus cultivar Beakdansim tig00014609_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51276

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8376--8449	1	74.0	1	72	0	58	86	0	13	0	0.57
8376--8450	11	6.5	11	83	13	98	85	0	14	0	0.60
8373--8449	8	9.1	8	80	17	77	85	0	14	0	0.59
8374--8442	18	3.8	19	81	11	90	85	0	14	0	0.60
8373--8448	24	3.3	24	87	10	115	85	0	14	0	0.60
8376--8449	35	2.1	35	87	5	105	86	0	13	0	0.57
9486--9858	83	4.6	83	97	2	695	28	13	22	35	1.92
10691--11548	114	7.6	113	94	2	1291	37	14	19	28	1.91
10708--11548	225	3.7	225	92	2	1307	37	14	19	28	1.91
10702--11548	339	2.5	336	90	2	1308	37	14	19	28	1.91
11685--11773	3	29.7	3	90	0	142	34	3	0	61	1.12
18190--18239	22	2.3	22	82	6	57	42	28	12	18	1.85
22552--22765	20	10.6	20	77	6	189	39	24	16	19	1.92
22552--22763	41	5.2	41	87	1	293	39	24	16	19	1.91
23314--23433	19	6.5	19	76	12	97	47	22	18	11	1.80
23346--23390	21	2.1	21	100	0	90	44	17	24	13	1.85
23458--23513	20	2.8	20	78	10	78	17	23	19	39	1.92
25212--25587	93	4.1	92	91	3	594	21	12	19	46	1.82
25212--25579	187	2.0	185	92	2	621	20	12	19	47	1.82
25696--25742	19	2.3	20	89	7	69	48	19	23	8	1.75
25728--25771	19	2.3	20	81	18	58	47	25	22	4	1.70
25816--25874	20	3.0	20	94	0	100	22	20	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26365--26469	21	5.0	21	72	3	86	20	36	19	23	1.95
26362--26472	42	2.6	42	77	5	109	20	36	18	23	1.95
27822--27874	14	3.9	13	76	9	52	33	0	18	47	1.49
27962--28057	33	2.8	33	88	3	129	42	20	22	13	1.87
28086--28163	24	3.2	24	90	3	122	39	20	19	20	1.92
29023--29317	20	14.6	19	77	11	218	20	18	23	36	1.95
29023--29294	121	2.2	121	88	1	402	20	18	23	37	1.94
29045--29294	40	6.2	41	89	1	353	20	18	23	37	1.94
29303--29355	20	2.7	20	82	5	63	16	18	22	41	1.90
36120--36169	2	26.0	2	92	8	86	48	0	0	52	1.00
37123--37233	33	3.6	32	82	15	151	43	38	9	9	1.68
37162--37227	28	2.4	28	94	2	116	43	36	9	10	1.71
44181--44227	24	2.0	24	82	0	58	29	2	6	61	1.32

Tables:   1

The End!