genome.fa.s6151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006151.1 Hibiscus syriacus cultivar Beakdansim tig00014612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72574

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8867--8929	32	1.9	31	84	9	81	49	6	11	33	1.64
10280--10329	13	3.8	13	82	10	66	34	8	20	38	1.82
13004--13044	18	2.2	19	87	12	59	7	31	0	60	1.24
14030--14100	31	2.3	31	97	0	133	36	8	12	42	1.73
14517--14556	10	4.0	10	84	12	55	32	27	0	40	1.57
20080--20105	2	13.0	2	100	0	52	50	0	0	50	1.00
28006--28048	22	2.0	21	86	4	59	44	0	13	41	1.44
28169--28237	24	2.9	25	79	18	76	52	2	1	43	1.25
28340--28402	31	2.1	28	82	14	72	49	3	6	41	1.44
28892--28948	24	2.5	23	83	16	82	38	0	3	57	1.16
29568--29725	21	7.8	20	72	7	86	38	25	17	18	1.92
29692--29905	20	10.6	20	82	5	243	35	25	20	19	1.96
30287--30357	33	2.2	33	89	0	106	11	23	16	47	1.79
30437--30542	21	5.6	20	70	16	91	45	18	25	10	1.81
30435--30513	21	3.8	21	79	12	92	45	16	26	11	1.81
30430--30546	41	3.1	38	79	14	136	46	17	26	10	1.80
30500--30553	14	3.5	14	73	22	54	42	24	25	7	1.80
30489--30558	33	2.1	33	97	0	131	47	20	25	7	1.75
30495--30569	33	2.3	33	92	0	123	46	24	22	6	1.75
30574--30662	19	5.2	19	68	25	72	11	22	22	43	1.84
30587--30676	14	5.7	14	73	23	72	10	24	23	42	1.84
30574--30684	33	3.4	33	93	0	195	10	23	20	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32374--32754	93	4.1	93	98	0	744	22	12	18	45	1.83
32798--32863	19	3.4	20	87	6	91	45	27	16	10	1.80
32798--32899	19	5.6	19	77	12	88	45	25	18	10	1.82
32889--32953	19	3.7	19	76	19	77	13	21	20	44	1.86
32911--32967	14	3.7	14	77	20	60	10	21	22	45	1.82
32895--32986	33	2.8	33	91	0	148	9	19	23	46	1.80
32958--33004	20	2.4	20	89	3	69	10	14	29	44	1.79
34930--34965	14	2.6	14	95	0	63	33	0	22	44	1.53
35072--35169	19	5.4	19	84	13	143	45	17	22	14	1.84
35072--35191	53	2.3	53	98	1	233	45	17	23	14	1.85
37492--37516	12	2.1	12	100	0	50	0	28	0	72	0.86
37691--37737	24	2.0	24	87	8	69	38	21	14	25	1.92
38420--38669	20	12.5	20	85	1	241	20	18	24	37	1.94
38656--38738	21	4.0	21	73	6	78	25	16	24	33	1.96
38636--38734	42	2.4	43	77	11	100	21	18	23	37	1.94
38879--38928	23	2.2	23	88	0	73	32	16	12	40	1.84
38965--39009	23	2.0	23	86	0	63	40	8	11	40	1.72
38875--39086	87	2.4	87	88	0	325	32	12	12	43	1.79
39043--39115	23	3.2	23	84	3	94	34	17	8	39	1.80
38959--39196	110	2.2	110	89	1	352	32	11	11	44	1.76
39066--39302	87	2.7	86	90	1	375	33	12	10	44	1.75
39153--39199	23	2.0	23	87	0	67	38	12	8	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39161--39212	23	2.3	23	82	0	68	40	9	7	42	1.66
38875--39282	197	2.1	197	91	0	656	32	12	11	43	1.77
39240--39290	23	2.2	23	86	6	68	35	19	7	37	1.81
40403--40436	12	2.8	12	90	4	50	17	0	2	79	0.86
45238--45263	13	2.0	13	100	0	52	46	15	15	23	1.83
46075--46125	26	2.0	25	85	7	68	37	7	7	47	1.62
49845--49875	16	1.9	16	93	0	53	61	3	9	25	1.42
49943--49993	15	3.4	14	78	10	57	41	5	15	37	1.72
49937--50009	30	2.5	29	90	2	119	43	6	17	31	1.75
50342--50404	23	2.7	23	77	5	63	47	0	1	50	1.10
50380--50417	11	3.5	11	82	10	51	52	0	0	47	1.00
50380--50432	20	2.7	20	75	16	56	50	1	0	47	1.12
50389--50544	26	5.5	28	65	24	78	49	1	0	48	1.14
50371--50553	60	3.1	60	77	17	163	49	1	0	48	1.12
50477--50556	31	2.5	33	76	19	89	51	0	1	47	1.08
50506--50549	22	2.0	23	81	4	54	56	0	0	43	0.99
50741--50860	42	2.9	42	84	2	161	50	12	14	23	1.76
53104--53304	72	2.7	72	82	9	246	31	27	14	25	1.95
54313--54354	21	2.0	21	90	4	66	33	19	7	40	1.78
55763--55790	14	2.0	14	100	0	56	42	14	21	21	1.88
61717--61745	14	2.1	14	100	0	58	20	6	51	20	1.70
62287--62311	7	3.6	7	100	0	50	0	12	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72495--72534	21	1.9	21	84	0	53	37	2	7	52	1.43

Tables:   1

The End!