genome.fa.s6152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006152.1 Hibiscus syriacus cultivar Beakdansim tig00014614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66445

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214--261	23	2.0	23	92	4	78	41	10	6	41	1.64
5395--5444	23	2.2	23	88	0	73	40	8	10	42	1.68
13281--13357	36	2.1	36	80	4	91	27	19	22	31	1.98
15139--15164	12	2.2	12	100	0	52	23	23	7	46	1.78
20903--21348	222	2.0	222	98	0	865	40	11	21	25	1.87
29713--29747	18	1.9	18	94	0	61	25	22	14	37	1.92
34363--34489	39	3.3	39	85	0	173	25	44	7	22	1.80
34511--34680	33	5.3	32	72	14	129	27	41	4	27	1.74
34602--34654	27	2.0	27	84	0	70	28	49	0	22	1.50
34675--34708	6	5.7	6	92	0	59	14	50	2	32	1.58
34486--34690	66	3.2	65	81	10	233	26	42	3	27	1.71
37210--37367	21	7.8	20	72	7	86	38	25	17	18	1.92
37334--37643	20	15.5	20	87	1	352	37	24	17	20	1.94
40811--41038	19	12.7	19	79	14	261	44	17	21	16	1.87
40797--41000	72	2.8	71	94	2	363	45	17	22	15	1.85
40797--40981	33	5.2	33	80	14	217	44	17	22	15	1.86
40850--41038	52	3.6	52	87	5	240	44	17	22	15	1.86
41047--41144	19	5.4	19	84	13	143	14	22	17	45	1.84
41028--41144	53	2.2	53	96	1	218	13	24	17	43	1.86
41251--41287	14	2.6	14	91	0	65	45	21	0	32	1.52
43242--43334	33	2.8	33	93	0	159	47	21	19	11	1.81
43205--43339	19	7.6	19	75	16	119	45	23	18	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43261--43317	14	3.7	14	75	20	51	45	22	19	12	1.83
43335--43463	19	7.3	19	75	17	125	8	17	28	45	1.77
43335--43426	33	2.8	33	93	3	150	7	18	28	45	1.76
43511--43886	93	4.1	93	97	0	718	46	18	12	22	1.83
45587--45675	14	5.7	14	71	21	70	43	22	23	10	1.83
45579--45692	33	3.5	33	95	2	212	46	20	22	10	1.81
45723--45759	19	1.9	19	94	0	65	13	21	16	48	1.80
45753--45812	20	2.9	21	82	5	77	13	26	16	43	1.85
45720--45812	41	2.3	40	86	1	123	12	24	17	45	1.83
45891--45961	33	2.2	33	92	0	115	47	18	22	11	1.80
46143--46197	22	2.5	22	81	0	74	20	16	40	23	1.91
46344--46497	20	7.7	20	81	7	168	18	18	26	37	1.93
46343--46497	40	3.8	40	82	4	186	18	18	26	37	1.93
46484--46566	21	4.0	21	73	6	78	25	16	24	33	1.96
46464--46562	42	2.4	43	77	11	100	21	18	23	37	1.94
47303--47536	123	1.9	124	83	7	307	29	20	18	31	1.97
49144--49207	2	32.0	2	100	0	128	50	0	0	50	1.00
51809--51867	27	2.1	28	81	9	68	22	23	6	47	1.75
52319--52361	16	2.7	16	100	0	86	58	23	11	6	1.57
52438--52468	16	1.9	16	93	0	53	58	19	12	9	1.62
53211--53260	10	4.6	10	79	18	55	54	24	12	10	1.67
53218--53258	14	3.2	14	74	25	54	53	26	12	7	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53211--53258	24	2.0	24	100	0	96	54	25	12	8	1.65
54132--54457	43	7.6	43	79	8	358	24	24	17	33	1.97
54132--54457	85	3.8	86	84	4	415	24	24	17	33	1.97
55650--55807	30	5.3	30	85	6	203	62	10	11	15	1.55
57259--57300	15	3.0	14	82	6	50	73	0	0	26	0.83
57259--57301	18	2.5	17	85	14	61	74	0	0	25	0.82
59152--59179	12	2.3	12	100	0	56	78	14	7	0	0.95

Tables:   1

The End!