genome.fa.s6156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006156.1 Hibiscus syriacus cultivar Beakdansim tig00014627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67794

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2936--2986	19	2.7	19	85	8	70	25	15	35	23	1.94
2830--3036	64	3.3	63	83	7	215	27	16	26	29	1.97
3358--3437	31	2.6	31	87	0	115	32	33	2	31	1.71
8331--8370	21	1.9	21	85	10	55	35	10	2	52	1.48
10275--10452	64	2.8	64	79	3	196	27	16	25	29	1.97
10400--10450	19	2.7	19	85	8	70	25	15	35	23	1.94
10293--10452	65	2.5	65	81	5	191	28	15	25	30	1.96
10906--10951	2	23.0	2	100	0	92	50	0	0	50	1.00
11334--11414	18	4.5	18	83	6	74	8	1	38	51	1.41
11334--11414	12	6.8	12	80	5	74	8	1	38	51	1.41
11359--11426	6	11.3	6	80	0	82	4	2	42	50	1.37
11606--11812	109	1.9	109	86	6	294	32	4	30	31	1.79
12017--12109	27	2.9	34	63	21	83	37	10	8	43	1.70
12001--12136	61	2.2	61	94	0	236	35	11	8	44	1.71
12194--12279	33	2.6	33	98	0	163	47	4	6	40	1.51
12194--12311	33	3.6	32	81	11	123	45	4	5	44	1.47
12261--12313	15	3.3	15	80	14	52	41	3	3	50	1.38
12323--12362	18	2.1	20	86	9	57	45	5	10	40	1.60
12419--12467	15	3.4	14	85	5	53	46	4	2	46	1.33
12448--12573	27	5.0	27	75	15	117	48	3	5	42	1.45
12455--12578	47	2.6	47	84	5	162	48	4	5	41	1.45
12434--12609	74	2.3	78	83	6	207	48	3	5	42	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12537--12608	7	10.6	7	74	14	53	45	2	6	44	1.45
12463--12723	81	3.3	78	72	15	212	45	4	6	42	1.50
12563--12594	15	2.1	15	94	0	55	43	0	6	50	1.27
12463--12749	27	10.7	27	72	16	106	45	4	6	43	1.49
12434--12608	9	21.0	8	66	21	67	48	4	5	42	1.44
12704--12745	9	4.7	9	77	11	50	40	0	7	52	1.29
12933--13226	20	14.6	20	72	9	152	37	24	18	19	1.94
12933--13227	121	2.4	117	81	10	328	37	24	18	19	1.94
12997--13202	41	5.1	41	88	1	308	38	24	18	18	1.93
13276--13330	21	2.6	21	85	0	74	20	25	18	36	1.94
13322--13360	20	2.0	20	94	0	69	38	15	20	25	1.92
16708--16796	20	4.4	21	84	5	114	35	23	21	19	1.95
16708--16794	40	2.2	40	91	4	140	36	22	20	19	1.95
16805--16940	19	7.4	19	80	9	174	47	11	21	20	1.81
16779--16937	72	2.2	71	88	3	230	47	11	21	19	1.81
16944--17012	33	2.1	34	86	2	95	14	24	20	40	1.90
17114--17150	14	2.6	14	86	0	56	48	21	0	29	1.50
18547--18591	21	2.3	18	81	11	54	24	11	42	22	1.86
19089--19175	20	4.3	20	95	0	147	37	21	19	20	1.94
19211--19292	19	4.3	19	85	3	69	12	17	23	47	1.80
19393--19767	94	4.0	93	95	1	635	47	18	12	21	1.81
19621--19653	17	1.9	17	88	11	50	45	15	15	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21367--21417	25	2.0	25	81	7	59	56	17	7	17	1.63
21480--21535	20	2.8	20	84	10	87	39	21	25	14	1.91
21471--21597	20	7.1	19	70	20	85	43	20	23	12	1.86
21471--21592	33	3.5	33	85	7	154	44	20	22	12	1.85
21604--21681	20	3.8	20	77	9	86	11	16	19	52	1.74
22236--22452	20	10.7	20	77	9	190	19	18	24	37	1.94
22236--22413	41	4.4	41	86	3	175	18	19	24	38	1.93
22301--22429	41	3.2	41	85	3	136	18	19	22	39	1.92
22438--22490	20	2.7	20	80	13	65	15	16	22	45	1.85
22540--22593	20	2.7	19	75	8	63	16	18	31	33	1.93
22696--22758	24	2.6	24	78	14	67	46	6	4	42	1.50
22733--22807	20	3.7	20	76	13	80	38	5	9	46	1.59
22729--22833	42	2.9	33	72	22	102	40	6	8	44	1.61
23033--23320	20	14.4	20	75	15	172	47	3	3	45	1.36
23033--23325	22	13.9	21	74	13	165	47	3	3	45	1.36
23095--23329	2	116.0	2	77	15	225	48	2	3	45	1.32
25590--25620	2	16.0	2	93	6	55	48	0	0	51	1.00
26505--26613	42	2.6	42	86	0	146	38	10	24	26	1.87
44214--44254	3	13.7	3	90	10	66	2	34	0	63	1.08
44860--44925	28	2.4	28	89	0	96	37	7	27	27	1.83
44892--44964	37	2.0	37	91	0	119	42	9	26	21	1.83
48368--48441	37	2.0	37	100	0	148	16	21	10	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61900--61930	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!