genome.fa.s6157.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006157.1 Hibiscus syriacus cultivar Beakdansim tig00014628_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86000

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2197--2256	23	2.6	23	89	2	84	65	18	5	11	1.43
2227--2287	31	2.0	30	83	3	77	63	19	3	13	1.42
3800--3838	20	2.0	20	94	0	69	17	30	23	28	1.97
3859--3908	11	4.3	12	76	16	52	32	0	2	66	1.03
3898--3981	24	3.5	24	76	13	102	45	0	0	54	0.99
3897--4000	48	2.1	49	88	10	160	45	0	0	54	0.99
3904--4051	48	3.2	47	78	14	141	43	0	0	55	1.04
3987--4047	19	3.0	20	77	20	65	42	1	0	55	1.09
4289--4351	22	2.7	23	74	18	58	55	1	3	39	1.25
4858--4898	14	2.9	15	82	10	50	39	0	0	60	0.96
16204--16255	20	2.6	20	96	0	95	38	26	13	21	1.90
16311--16503	20	9.6	20	80	5	210	35	25	19	19	1.96
16311--16503	60	3.2	60	81	0	242	35	25	19	19	1.96
16878--16948	33	2.2	33	92	0	115	11	22	18	47	1.80
17069--17123	14	3.6	14	73	21	56	40	23	27	9	1.85
17069--17139	33	2.2	33	92	0	115	42	25	23	8	1.82
17135--17232	19	5.7	19	70	22	81	10	24	22	42	1.84
17157--17246	14	5.7	14	74	23	81	8	25	23	42	1.83
17140--17254	33	3.5	33	95	0	212	9	24	20	45	1.81
18933--19309	182	2.0	186	97	2	717	22	12	18	46	1.83
18933--19309	93	4.1	93	96	2	717	22	12	18	46	1.83
19349--19475	19	7.3	19	72	20	107	45	28	17	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19385--19475	31	2.8	32	90	3	139	46	27	18	7	1.76
19471--19605	19	7.6	19	75	16	128	11	19	23	45	1.82
19493--19549	14	3.7	14	77	20	60	10	21	22	45	1.82
19476--19568	33	2.8	33	95	0	168	10	20	21	47	1.80
21417--21489	38	1.9	38	97	0	137	28	1	16	53	1.51
21412--21476	19	3.4	19	64	8	51	24	1	15	58	1.46
21471--21506	14	2.6	14	95	0	63	33	0	22	44	1.53
21613--21714	19	5.6	19	84	13	151	44	17	23	14	1.86
21721--22050	33	9.5	33	77	16	212	14	20	18	46	1.83
21743--22050	19	17.4	19	78	17	351	14	20	18	47	1.83
21743--22022	52	5.2	52	90	6	338	14	21	17	47	1.83
24521--24565	23	2.0	23	86	8	65	35	22	15	26	1.94
25237--25605	20	18.5	20	86	4	458	20	18	26	34	1.96
29013--29074	6	11.0	6	84	8	78	20	32	29	17	1.96
29011--29073	28	2.2	28	100	0	126	22	31	28	17	1.96
32574--32661	21	4.1	21	73	16	81	37	28	10	23	1.88
34447--34529	25	3.6	25	65	25	74	18	3	8	69	1.28
52980--53621	323	2.0	323	93	0	1088	38	10	12	38	1.77
59111--59616	198	2.5	200	86	4	669	23	14	28	33	1.94
59111--59979	406	2.1	398	80	8	943	24	14	27	33	1.95
59868--59964	50	1.9	52	83	8	128	24	15	26	32	1.95
59599--59963	198	1.8	198	84	2	502	26	16	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60769--60960	82	2.3	83	83	6	228	26	18	21	33	1.96
61480--61550	32	2.2	32	84	0	88	29	26	12	30	1.93
62640--62681	19	2.3	18	88	8	66	11	7	2	78	1.04
64814--64937	63	2.0	63	91	0	203	37	16	20	24	1.93
66937--67023	36	2.6	32	74	15	84	57	4	13	24	1.55
66937--67035	32	2.9	32	75	15	101	55	4	15	25	1.57
68856--68898	19	2.3	19	84	8	52	34	0	0	65	0.93
70155--70202	24	2.1	22	88	7	69	43	0	0	56	0.99
76041--76077	9	4.1	9	85	0	56	0	32	0	67	0.91
81898--81939	22	2.0	21	90	4	66	38	9	11	40	1.75
83914--83955	20	2.1	20	90	0	66	23	16	9	50	1.75
84887--85094	20	10.5	20	86	3	224	36	25	17	20	1.94
84906--85094	59	3.2	58	86	5	229	35	24	17	21	1.95
85766--85812	24	2.0	24	87	8	69	25	14	21	38	1.92

Tables:   1

The End!