genome.fa.s6158.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006158.1 Hibiscus syriacus cultivar Beakdansim tig00014629_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116426

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512--622	20	5.6	20	87	4	152	27	13	19	39	1.89
775--987	96	2.2	96	85	4	279	43	14	22	19	1.87
1901--2393	253	2.0	230	83	10	551	29	13	18	39	1.88
2740--2786	18	2.7	18	86	3	69	27	29	8	34	1.87
5312--5365	2	27.5	2	90	3	83	55	0	0	44	0.99
12580--12692	35	3.2	34	83	5	136	44	21	0	33	1.58
13747--13858	35	3.2	34	83	2	143	37	0	19	41	1.58
17766--18122	179	2.0	178	94	0	624	34	16	12	36	1.86
18639--18720	23	3.7	21	75	15	76	29	24	20	25	1.99
18653--18722	23	3.0	23	85	0	95	30	21	21	27	1.98
21696--21737	21	2.0	21	100	0	84	28	14	9	47	1.75
21726--21802	33	2.4	32	86	4	118	31	7	15	45	1.75
41108--41143	11	3.3	11	84	0	54	63	19	0	16	1.30
41132--41198	16	4.2	16	71	7	55	47	23	11	16	1.80
41198--41275	32	2.4	33	80	6	88	39	26	12	20	1.89
42912--42947	8	4.5	8	100	0	72	38	0	61	0	0.96
43842--43883	3	14.0	3	94	0	75	64	2	0	33	1.07
44121--44260	40	3.4	40	75	9	147	22	20	31	26	1.98
44080--44260	83	2.2	83	88	4	258	22	18	29	28	1.98
44163--44567	138	2.9	137	84	3	485	27	16	27	27	1.97
44588--44872	36	8.2	36	80	4	246	42	12	18	26	1.87
44677--44754	32	2.5	32	87	2	104	34	10	16	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44578--44953	171	2.2	171	90	0	581	40	12	18	28	1.87
44848--44932	32	2.7	32	82	8	102	32	14	16	36	1.89
45093--45205	37	3.1	35	82	9	120	36	14	17	31	1.90
47560--47868	131	2.4	131	84	0	402	32	10	14	42	1.80
59914--60190	112	2.5	110	85	2	349	29	25	15	28	1.96
60133--60237	47	2.2	47	93	0	174	31	21	12	34	1.91
60133--60253	47	2.6	47	88	2	145	32	21	15	30	1.95
60022--60348	158	2.1	158	85	1	431	30	24	15	29	1.96
59905--60459	269	2.1	270	87	0	797	29	25	15	28	1.96
60175--60490	111	2.8	111	88	1	463	30	25	16	27	1.97
60663--60688	3	8.7	3	100	0	52	34	30	0	34	1.58
72788--72863	40	1.9	40	84	7	102	0	19	7	72	1.09
73301--73332	11	2.8	11	95	4	55	43	0	0	56	0.99
73328--73410	3	27.7	3	97	0	157	65	0	1	33	1.01
73722--74252	113	4.7	112	92	1	805	29	20	12	38	1.89
74927--75645	83	8.7	83	93	0	1235	36	21	13	28	1.91
76685--76735	18	2.8	18	77	14	52	3	15	0	80	0.86
87294--87349	26	2.2	25	78	9	60	66	1	1	30	1.12
88091--88125	16	2.1	18	89	10	56	74	5	5	14	1.19
89059--89092	12	2.8	12	81	0	50	0	29	14	55	1.40
89552--89576	11	2.3	11	100	0	50	48	0	0	52	1.00
89572--89624	3	17.7	3	96	0	97	64	0	1	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95322--95361	17	2.4	17	100	0	80	20	12	12	55	1.69
95687--95753	13	5.0	13	76	7	71	37	20	20	20	1.95
95686--95736	26	1.9	27	92	4	86	41	21	17	19	1.91
95687--95752	14	4.9	14	79	5	73	37	21	19	21	1.94
99045--99089	10	4.7	9	84	13	54	62	0	0	37	0.96
99039--99108	19	3.5	19	79	16	63	60	1	0	38	1.06
99039--99107	10	7.1	10	77	19	51	59	1	0	39	1.06
99398--99526	59	2.2	59	87	0	177	17	21	24	36	1.94
103450--103547	21	4.7	21	75	15	87	38	21	18	21	1.93
103450--103566	20	5.7	20	73	14	78	39	23	17	19	1.92
103514--103706	20	9.6	20	81	3	210	35	25	19	19	1.95
104084--104154	33	2.2	33	89	0	106	11	23	16	47	1.79
104227--104343	41	3.1	38	79	14	136	45	17	25	11	1.82
104234--104309	21	3.7	21	85	3	109	44	18	25	11	1.83
104294--104350	14	3.7	14	75	20	60	43	22	24	8	1.81
104286--104366	33	2.5	33	93	0	135	45	23	22	8	1.79
104362--104459	19	5.7	19	68	22	72	10	24	23	41	1.85
104384--104473	14	5.7	14	74	23	81	8	25	24	41	1.84
104367--104481	33	3.5	33	95	0	203	9	24	21	44	1.82
106179--106557	92	4.1	93	97	1	726	22	12	18	45	1.83
106601--106729	19	7.3	19	75	17	125	45	28	17	8	1.77
106637--106729	33	2.8	32	91	4	150	46	27	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106601--106729	52	2.5	52	74	14	140	45	28	17	8	1.77
106725--106845	19	6.6	19	80	10	135	11	19	23	45	1.83
108907--109005	19	5.5	19	82	15	138	44	17	23	15	1.86
108907--109022	51	2.2	53	93	3	200	43	17	25	14	1.87
109012--109160	19	8.6	19	73	21	139	15	22	18	43	1.87
109012--109128	52	2.2	52	95	0	207	16	21	17	44	1.87
108998--109160	85	1.9	86	85	1	229	17	22	19	41	1.91
109069--109160	33	2.8	33	98	1	175	13	23	18	44	1.85
109088--109142	14	3.6	14	73	21	56	10	23	20	45	1.82
109219--109315	19	5.4	19	82	15	134	45	17	22	14	1.85
109219--109334	52	2.2	52	96	3	216	43	18	24	13	1.86
111817--111863	24	2.0	24	87	8	69	38	21	14	25	1.92
112546--112772	20	11.5	20	79	9	189	19	18	24	37	1.93
112546--112645	36	2.6	37	90	7	157	19	16	22	43	1.88
112623--112753	61	2.2	60	86	6	176	21	19	25	33	1.97
112759--112841	21	4.0	21	73	6	78	25	16	24	33	1.96
113804--113850	20	2.4	19	82	10	67	53	10	17	19	1.72
113813--113855	20	2.3	19	88	11	63	51	11	16	20	1.75
113417--113883	179	2.6	180	85	4	606	43	13	16	27	1.84
115951--115981	14	2.2	14	94	0	53	19	9	61	9	1.54
116362--116426	32	2.0	32	94	5	114	52	0	44	3	1.16

Tables:   1

The End!