genome.fa.s6159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006159.1 Hibiscus syriacus cultivar Beakdansim tig00014632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201630

Tables:   1   

This is table  1  of  1  ( 120 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2499--2548	20	2.5	20	100	0	100	14	16	34	36	1.88
2761--3147	200	1.9	204	93	2	665	34	10	6	48	1.63
14373--14439	34	1.9	34	85	14	93	20	11	17	49	1.79
17695--17818	27	4.6	27	95	1	221	36	12	7	43	1.71
19653--19703	22	2.3	22	82	3	57	41	19	17	21	1.91
20412--20552	21	6.7	21	91	0	219	29	21	23	25	1.99
26857--26926	23	3.0	23	85	8	97	24	27	25	22	2.00
26943--27160	103	2.1	103	98	0	418	37	23	13	25	1.91
28809--28852	12	4.0	12	75	22	51	45	18	0	36	1.49
28813--28861	20	2.5	20	96	0	89	40	20	0	38	1.53
31830--31883	23	2.3	23	87	9	83	25	25	25	22	2.00
31903--32116	103	2.1	103	94	0	374	36	23	12	27	1.91
32229--32281	24	2.2	24	83	3	63	41	26	5	26	1.78
36618--36659	16	2.5	17	80	7	50	42	0	0	57	0.99
47415--47447	3	11.3	3	93	6	59	63	0	0	36	0.95
47955--47991	17	2.2	17	100	0	74	13	5	35	45	1.66
49646--49809	87	1.9	87	83	5	215	41	19	13	25	1.88
52056--52383	20	16.2	20	79	10	289	39	25	20	15	1.91
52056--52383	40	8.1	40	81	8	371	39	25	20	15	1.91
52113--52383	102	2.7	101	85	10	390	38	26	20	15	1.92
52479--52510	6	5.5	6	96	3	57	31	53	15	0	1.43
53007--53089	6	14.5	6	98	1	138	0	16	53	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53193--53538	20	16.9	20	78	12	285	17	18	26	37	1.93
53193--53479	42	7.0	41	90	5	404	17	18	27	35	1.94
53194--53479	62	4.6	61	85	9	325	17	18	27	36	1.94
53192--53536	42	8.4	41	85	6	391	17	18	26	37	1.93
53193--53538	62	5.6	58	82	9	302	17	18	26	37	1.93
54744--55150	202	2.0	202	81	6	477	36	10	18	34	1.85
56142--56173	2	16.5	2	93	6	57	50	0	0	50	1.00
56141--56208	32	2.1	32	83	10	84	41	0	0	58	0.98
58167--58219	21	2.5	21	87	0	79	20	24	18	35	1.95
58228--58294	20	3.3	20	89	0	98	31	23	19	25	1.98
59364--59394	15	2.1	15	93	0	53	77	0	22	0	0.77
61629--61697	20	3.5	19	84	7	93	36	23	23	17	1.95
61790--61830	20	2.1	20	90	4	66	17	24	21	36	1.94
61779--61830	19	2.7	19	84	3	68	15	23	23	38	1.92
61932--61968	14	2.6	14	86	0	56	48	21	0	29	1.50
63358--63460	42	2.5	42	76	6	102	24	19	33	22	1.97
63941--64009	20	3.5	20	84	7	95	36	24	20	18	1.95
64054--64100	20	2.3	20	92	0	76	17	21	21	40	1.91
64074--64167	33	2.8	34	81	3	127	12	19	23	44	1.85
64139--64190	20	2.6	20	87	6	70	17	15	26	40	1.89
64022--64187	87	1.9	87	90	2	262	15	19	21	44	1.86
65858--65961	20	5.2	20	83	1	84	44	22	15	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66253--66314	22	2.8	22	87	0	97	22	12	37	27	1.91
66516--66584	20	3.5	20	89	0	102	20	21	15	42	1.89
66911--66975	11	5.6	11	72	22	53	24	23	24	27	2.00
66910--66975	23	2.9	22	86	6	78	24	22	25	27	2.00
69100--69135	16	2.2	17	90	5	56	27	0	16	55	1.42
77906--77950	21	2.1	21	87	0	63	31	28	24	15	1.96
79282--79409	31	4.1	31	77	13	136	27	18	20	33	1.96
79368--79464	30	3.2	30	86	1	104	23	20	23	31	1.98
79396--79467	30	2.4	30	92	0	117	26	20	22	30	1.98
82755--82799	21	2.1	21	87	0	63	31	28	24	15	1.96
84132--84259	31	4.1	31	77	13	136	27	18	20	33	1.96
84218--84314	30	3.2	30	86	1	104	23	20	23	31	1.98
84246--84317	30	2.4	30	92	0	117	26	20	22	30	1.98
99120--99170	23	2.1	25	85	7	70	52	0	0	47	1.00
99631--99678	22	2.1	23	88	11	73	60	8	8	22	1.52
100133--100180	24	1.9	26	87	8	73	60	0	6	33	1.22
100146--100184	20	1.9	21	89	5	62	56	0	7	35	1.28
101612--101658	2	24.0	2	87	12	71	46	2	0	51	1.13
101927--101991	30	2.2	28	79	12	69	33	6	1	58	1.32
102199--102243	13	3.2	13	79	14	54	71	4	0	24	1.05
111278--111332	22	2.5	21	82	11	58	54	1	1	41	1.21
111626--111658	7	4.7	7	92	0	57	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113643--114371	106	6.9	106	91	1	1111	22	18	25	33	1.96
115116--115166	22	2.3	22	96	0	93	25	11	27	35	1.91
115790--115862	11	6.8	10	76	13	65	0	15	5	79	0.90
115777--115873	26	3.5	26	73	23	74	2	13	7	77	1.06
115790--115861	21	3.4	20	81	14	74	0	15	5	79	0.91
116518--116724	105	2.0	105	100	0	414	38	14	10	36	1.80
118850--118888	7	5.7	7	87	6	62	69	0	0	30	0.89
118850--118886	13	2.8	13	91	4	56	70	0	0	29	0.88
118850--118888	20	2.0	20	94	0	69	69	0	0	30	0.89
120747--120785	20	2.0	20	89	0	60	43	10	0	46	1.37
126863--127175	105	3.0	105	96	0	563	27	21	16	34	1.95
128606--128648	24	1.9	24	86	13	65	41	0	2	55	1.12
128645--128680	2	18.0	2	100	0	72	50	0	0	50	1.00
129979--130028	22	2.3	22	82	6	57	22	4	12	62	1.46
131914--132230	83	3.8	82	79	7	347	29	19	16	34	1.94
131870--132226	164	2.2	166	82	6	413	29	17	16	36	1.92
134039--134113	24	3.1	24	70	16	64	24	2	5	68	1.24
147955--148280	42	7.7	41	80	9	293	48	5	17	27	1.70
147962--148208	127	1.9	127	85	6	340	47	5	19	28	1.71
147955--148280	85	3.9	84	78	8	313	48	5	17	27	1.70
147965--148280	127	2.5	125	80	8	329	48	6	17	28	1.70
147955--148280	168	1.9	169	81	7	387	48	5	17	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154485--154529	23	2.0	23	90	0	72	24	26	26	22	2.00
154497--154960	149	3.1	149	97	0	858	34	20	15	28	1.94
156356--156495	63	2.2	63	88	0	199	27	21	19	32	1.97
159588--159632	23	2.0	23	86	0	63	26	26	24	22	2.00
159600--159948	149	2.3	149	97	0	655	35	21	15	28	1.94
161455--161556	44	2.3	44	84	0	123	29	16	21	32	1.95
167784--167824	21	2.0	21	90	0	64	29	19	24	26	1.98
168084--168470	183	2.1	184	92	0	643	42	2	8	45	1.48
168476--168509	9	3.7	9	92	4	50	26	8	14	50	1.72
171638--171663	2	13.0	2	100	0	52	50	0	0	50	1.00
171721--171767	25	1.9	24	86	4	67	44	21	4	29	1.71
173082--173115	17	1.9	18	88	5	52	38	0	5	55	1.24
173252--173333	30	2.7	30	88	0	119	32	15	10	40	1.83
177303--177355	21	2.5	21	96	0	97	30	18	11	39	1.86
178850--178913	32	1.9	34	84	6	87	53	6	3	37	1.42
189616--189857	81	3.0	81	95	0	430	25	26	9	38	1.86
193284--193338	20	2.8	20	82	0	74	29	21	12	36	1.91
194108--194161	24	2.2	24	90	0	81	22	18	16	42	1.89
196373--196408	18	2.0	18	88	0	54	58	22	2	16	1.51
196697--196739	20	2.2	20	86	0	59	18	18	20	41	1.90
198237--198286	20	2.4	21	90	3	75	22	18	36	24	1.95
198296--198339	21	2.1	21	95	0	79	29	15	31	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198620--198670	21	2.4	21	86	0	66	35	31	13	19	1.91
198633--198728	41	2.3	43	77	10	119	34	35	7	22	1.82
198881--199024	42	3.5	41	83	5	150	20	14	35	29	1.93
198966--199028	17	3.1	21	61	21	53	22	12	39	25	1.89
200523--200554	14	2.3	14	94	0	55	43	25	18	12	1.85
200490--200555	34	1.9	34	81	6	80	46	21	13	18	1.83
200932--200990	20	2.8	21	89	7	93	25	20	38	15	1.91
201018--201084	27	2.5	27	87	2	100	19	2	29	47	1.64
201223--201261	20	1.9	21	89	5	62	35	10	20	33	1.86
201253--201301	20	2.4	21	76	10	57	22	12	28	36	1.90

Tables:   1

The End!