Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000616.1 Hibiscus syriacus cultivar Beakdansim tig00001194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50946

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3532--3573
21
2.0
21
86
13
59
7
4
9
78
1.08
8576--8644
21
3.5
21
68
22
67
23
24
27
24
2.00
8557--8648
38
2.4
38
92
0
157
23
28
25
22
2.00
8803--8907
46
2.3
46
95
1
185
32
18
6
42
1.76
12685--12772
2
46.5
2
89
10
141
46
0
0
53
1.00
14665--14691
3
9.0
3
100
0
54
0
0
33
66
0.92
14792--14860
21
3.5
21
70
22
67
21
26
27
24
1.99
14773--14868
38
2.5
38
91
0
156
22
28
22
26
1.99
15018--15122
46
2.3
46
93
1
176
32
18
5
43
1.73
15042--15114
22
3.2
21
69
14
56
32
19
5
42
1.74
15527--15564
20
2.0
20
89
5
60
18
28
34
18
1.95
25918--25964
5
9.4
5
90
9
62
36
0
0
63
0.94
25919--25966
3
16.7
3
80
20
50
35
0
0
64
0.94
25919--25985
32
2.1
31
86
8
91
34
0
0
65
0.93
26053--26125
33
2.2
33
82
4
85
39
16
13
30
1.87
26483--26555
22
3.2
21
79
11
74
35
0
0
64
0.94
26465--26540
8
9.4
8
70
17
50
34
1
1
63
1.11
34799--34856
12
5.0
12
77
8
57
41
18
18
20
1.91
34880--34925
22
2.1
23
88
8
69
15
30
23
30
1.95
35648--35771
32
3.9
32
77
9
128
30
18
20
30
1.96
36144--36183
2
19.5
2
94
5
71
47
2
0
50
1.14
46804--46872
28
2.5
28
90
9
108
47
13
4
34
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47224--47282
26
2.3
26
96
0
109
32
27
3
37
1.73
47941--48025
31
2.8
30
78
8
100
40
8
5
45
1.58
49408--49440
2
17.0
2
87
6
50
45
0
0
54
0.99
50555--50592
19
2.0
20
89
5
60
18
0
31
50
1.47

Tables:   1

The End!