Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006160.1 Hibiscus syriacus cultivar Beakdansim tig00014635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77909
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Found at i:968 original size:13 final size:13
Alignment explanation
Indices: 952--976 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
942 GTACAAAAAC
952 TAATTGTAAAATA
1 TAATTGTAAAATA
965 TAATTGTAAAAT
1 TAATTGTAAAAT
977 CTATTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
TAATTGTAAAATA
Found at i:10617 original size:22 final size:21
Alignment explanation
Indices: 10575--10614 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10565 GAGTTTATTT
*
10575 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
10596 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
10615 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:14209 original size:2 final size:2
Alignment explanation
Indices: 14202--14246 Score: 51
Period size: 2 Copynumber: 24.0 Consensus size: 2
14192 TCCATATTTT
* *
14202 TA TA TA TA TA TA CA TA TA TA T- TA T- TA TT TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14241 TA TA TA
1 TA TA TA
14247 GTTTGCAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
1 3 0.08
2 33 0.92
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14302 original size:40 final size:37
Alignment explanation
Indices: 14231--14358 Score: 116
Period size: 38 Copynumber: 3.4 Consensus size: 37
14221 ATTATTATTT
* ** ** *
14231 ATATATATATTATATAGTTTGCAAATGATTTTCGAAA
1 ATATATATAATATATAGTTTTTAAAACATTTTAGAAA
14268 ATATGTATATAATATATAAGTTTTTAAAACATTTTAGAAA
1 ATA--TATATAATATAT-AGTTTTTAAAACATTTTAGAAA
* *
14308 ATATATATCATATATAGTTTTTAAAATAATTTGT-GAAA
1 ATATATATAATATATAGTTTTTAAAA-CATTT-TAGAAA
14346 ACT-TATATAATAT
1 A-TATATATAATAT
14359 TTTGAAACAT
Statistics
Matches: 76, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
37 14 0.18
38 29 0.38
39 13 0.17
40 20 0.26
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.44
Consensus pattern (37 bp):
ATATATATAATATATAGTTTTTAAAACATTTTAGAAA
Found at i:14381 original size:59 final size:62
Alignment explanation
Indices: 14309--14426 Score: 147
Period size: 61 Copynumber: 1.9 Consensus size: 62
14299 TTTTAGAAAA
14309 TATATATCATATATAGTTTTTAAAATAATTTGTGAAAACT-TATA-TA-AT-ATTTTGAAACATT
1 TATATAT-ATATATAG-TTTTAAAA-AATTTGTGAAAACTATATAGTACATAATTTTGAAACATT
** *
14370 TATATAT-TATATAGTTTTAAAACCTTTTTGAAAACTATATAGTACATAATTTTGAAA
1 TATATATATATATAGTTTTAAAAAATTTGTGAAAACTATATAGTACATAATTTTGAAA
14427 ACTTTTTTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
57 11 0.22
58 12 0.24
59 9 0.18
60 2 0.04
61 16 0.32
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (62 bp):
TATATATATATATAGTTTTAAAAAATTTGTGAAAACTATATAGTACATAATTTTGAAACATT
Found at i:14445 original size:36 final size:35
Alignment explanation
Indices: 14370--14493 Score: 133
Period size: 35 Copynumber: 3.5 Consensus size: 35
14360 TTGAAACATT
* * * * *
14370 TATATATTATATAGTTTTAAAACCTTTTTGAAAAC
1 TATATAATATATAATTTTAAAACTTTTTTTAAAAA
* *
14405 TATATAGTACATAATTTTGAAAACTTTTTTTAAAAA
1 TATATAATATATAATTTT-AAAACTTTTTTTAAAAA
*
14441 TATATAATATATAGATTTTAAAA-TATTTTTAAAAA
1 TATATAATATATA-ATTTTAAAACTTTTTTTAAAAA
* *
14476 TATATATTATATAGTTTT
1 TATATAATATATAATTTT
14494 TTCGAAATAA
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
34 4 0.05
35 38 0.50
36 29 0.38
37 5 0.07
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.48
Consensus pattern (35 bp):
TATATAATATATAATTTTAAAACTTTTTTTAAAAA
Found at i:15577 original size:3 final size:3
Alignment explanation
Indices: 15569--15630 Score: 51
Period size: 3 Copynumber: 21.3 Consensus size: 3
15559 ATTTTATGAC
* * *
15569 TAT TAT TAT TAT TAT TAT TATT TAT T-T CAT T-T T-T TCT GTAT CAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT
15613 T-T TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
15631 TTTTTACTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
2 7 0.14
3 37 0.76
4 5 0.10
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:15680 original size:16 final size:16
Alignment explanation
Indices: 15659--15710 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
15649 TCTTTGGATT
15659 TATATACATACTTATA
1 TATATACATACTTATA
15675 TATATACATACTTATA
1 TATATACATACTTATA
*
15691 TATATACATA-ATATA
1 TATATACATACTTATA
15706 TATAT
1 TATAT
15711 TTTTCCTTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
15 9 0.26
16 26 0.74
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (16 bp):
TATATACATACTTATA
Found at i:15854 original size:33 final size:32
Alignment explanation
Indices: 15807--15869 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
15797 TACAACTATC
* *
15807 TTATTTTATGTTTTTATTTTTTATATATATTCA
1 TTATTTTATGTTTTTACTTCTTAT-TATATTCA
15840 TTATTATTAT-TTTTTACTTCTTATTATATT
1 TTATT-TTATGTTTTTACTTCTTATTATATT
15870 TTTTTTTACT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 6 0.22
33 17 0.63
34 4 0.15
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.70
Consensus pattern (32 bp):
TTATTTTATGTTTTTACTTCTTATTATATTCA
Found at i:15992 original size:37 final size:37
Alignment explanation
Indices: 15951--16051 Score: 89
Period size: 37 Copynumber: 2.7 Consensus size: 37
15941 TTATTTCATT
*
15951 TTTTTTTGTATTTATTTATTTATTTTCCGTTGATTTA
1 TTTTTTTGTATTTATTTATTTATTTTCCGTTAATTTA
* * * * *
15988 TTTTTACT-TATTTTTTTCTTT-CTTTCCTTTAATTTA
1 TTTTT-TTGTATTTATTTATTTATTTTCCGTTAATTTA
* * *
16024 TTTCTTAGTTATTTATTTGTTTATTTTC
1 TTTTTTTG-TATTTATTTATTTATTTTC
16052 TATAACATTT
Statistics
Matches: 48, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
36 16 0.33
37 27 0.56
38 5 0.10
ACGTcount: A:0.15, C:0.09, G:0.05, T:0.71
Consensus pattern (37 bp):
TTTTTTTGTATTTATTTATTTATTTTCCGTTAATTTA
Found at i:19579 original size:95 final size:94
Alignment explanation
Indices: 19411--19654 Score: 314
Period size: 95 Copynumber: 2.7 Consensus size: 94
19401 TATAATATTA
* *
19411 TATATATACAATAAATCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGA
1 TATATATACAATAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGA
* *
19476 TAATATTCAGCTAGCCTGATAAAGGTAAT
66 TAAGATTCAGCTAACCTGATAAAGGTAAT
19505 TATACTATACAATAAAGCTTGAGCTGTCCCTCTA-AGGCAATTGGTTAAACGCCCCGGCTTTATG
1 TATA-TATACAATAAAGCTTGAGCTGTCCCTCTAGA-GCAATTGGTTAAACGCCCCGGCTTTATG
*
19569 GATAAGATTCAGCTAACCTGATAAAGGT-GT
64 GATAAGATTCAGCTAACCTGATAAAGGTAAT
* * *
19599 T-TATAT---ATTAAG--T----TGTCCCTCTAGAGCAATTGGTTAAACACCCCGACTTTATGGA
1 TATATATACAATAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGA
19654 T
66 T
19655 CCAACTAGCT
Statistics
Matches: 139, Mismatches: 8, Indels: 17
0.85 0.05 0.10
Matches are distributed among these distances:
83 39 0.28
84 1 0.01
87 1 0.01
89 5 0.04
92 3 0.02
93 2 0.01
94 7 0.05
95 81 0.58
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (94 bp):
TATATATACAATAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGA
TAAGATTCAGCTAACCTGATAAAGGTAAT
Found at i:20933 original size:84 final size:82
Alignment explanation
Indices: 20799--21922 Score: 1022
Period size: 84 Copynumber: 13.6 Consensus size: 82
20789 GCTCAAGGAA
* * * * * * *
20799 AGAAGGGTTATTTGCCAACAAAAGACCTTCAATTTCGACTACGCTAAGCTCGAAGGCATATCATT
1 AGAAGGGTTATCTG-C-ACCAAAGACCTTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATT
* * * *
20864 TACAGCATAGCTCAAGTCA
64 TGCAGCATAACTTAAGTCG
* * * * ** * * *
20883 AGAAGGGCTATCTGTCACCCAAAGACCTTCGATTTCAAATACGTTCAGCTCTAAGGCATATTATT
1 AGAAGGGTTATCTG-CA-CCAAAGACCTTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATT
*
20948 AGCAGCATAACTTAAGTCG
64 TGCAGCATAACTTAAGTCG
*
20967 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTG-C-ACCAAAGACCTTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATT
* *
21032 TGTAGCATAACTTAAATCG
64 TGCAGCATAACTTAAGTCG
* * * ** * **
21051 AAAATGGCTATCTG--CCAAAG-CCTTCGAGTTCGGTTACACTCAGCTCAAAGGCACCAAGATTT
1 AGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGACTACACTCAGCTCGAAGGCA-CATCATTT
21113 GCAGCATAACTTAAGTCG
65 GCAGCATAACTTAAGTCG
* * *
21131 ATAAGGGTTATTTGCTAACCAAAGACCTTCGAGTTCGACTACGA-TCAGCTCCAAGGCACATCAT
1 AGAAGGGTTATCTGC--ACCAAAGACCTTCGAGTTCGACTAC-ACTCAGCTCGAAGGCACATCAT
*
21195 TTGTAGCATAACTTAAGTCG
63 TTGCAGCATAACTTAAGTCG
* * * *
21215 AGAAGGGCTATCTG--CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTT
1 AGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCGAAGGCACATCATTT
21278 GCAGCATAACTTAAGTCG
65 GCAGCATAACTTAAGTCG
* * ** * * *
21296 AGAAGGGGTTATCTACCAACCAAAGACCTTTGAGTTCGACTATGCTCAGCTCCAAAGCACGTCAT
1 AGAA-GGGTTATCT-GC-ACCAAAGACCTTCGAGTTCGACTACACTCAGCTCGAAGGCACATCAT
* *
21361 TTGCAACATAGCTTAAGTCG
63 TTGCAGCATAACTTAAGTCG
* ** * * * * *
21381 AGAAGGGCTATCTG--CCAAAGACCCCCTAGTTAGATTACACTCAGCTTTGACGGCACATCATTT
1 AGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCGAAGGCACATCATTT
* * * *
21444 ACAGCATAACTCAAGGCT
65 GCAGCATAACTTAAGTCG
* * * *
21462 AGAAGGGTTATATGTCACCAAAAGACC-CCGAGTTCGATTACACTCAGCTTCGAGGGCACATCAT
1 AGAAGGGTTATCTG-CACC-AAAGACCTTCGAGTTCGACTACACTCAGC-TCGAAGGCACATCAT
* * *
21526 TTGTAGCATAACTCAAGTCT
63 TTGCAGCATAACTTAAGTCG
* * *
21546 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGTTCTAAGGCACATCATT
1 AGAAGGGTTATCTG-C-ACCAAAGACCTTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATT
*
21611 TGCAGCATAGCTTAAGTCG
64 TGCAGCATAACTTAAGTCG
* * * * *
21630 AGAATGGATATCTG--CCAAAGACC-CCAAGTTCGATTACACTCAGCTTCG-AGGTCACATCATT
1 AGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCGAAGG-CACATCATT
* * * *
21691 TACAGCATAACTCAAGGCT
64 TGCAGCATAACTTAAGTCG
* * * *
21710 AGAAGGGTTATCTGTCA-CAATGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
1 AGAAGGGTTATCTG-CACCAAAGACCTTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATTT
* *
21774 GCAGCATAGCTTAAGTCA
65 GCAGCATAACTTAAGTCG
* * * * ** *
21792 AGAAGGGTTATCT--ACCGAAGACCCTCAAGTTCGATTACACTCAGCTTCGGGGGCACATTATTT
1 AGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCGAAGGCACATCATTT
21855 GCAGCATAACTTAAGTCG
65 GCAGCATAACTTAAGTCG
* *
21873 AGAAGGGTTATCTGCCAACCAAAGACCTTCAAG-TCTGATTACACTCAGCT
1 AGAAGGGTTATCTG-C-ACCAAAGACCTTCGAGTTC-GACTACACTCAGCT
21923 TAGAGGCAAA
Statistics
Matches: 849, Mismatches: 154, Indels: 74
0.79 0.14 0.07
Matches are distributed among these distances:
79 51 0.06
80 158 0.19
81 113 0.13
82 52 0.06
83 21 0.02
84 311 0.37
85 116 0.14
86 27 0.03
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (82 bp):
AGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATTTG
CAGCATAACTTAAGTCG
Found at i:21153 original size:164 final size:164
Alignment explanation
Indices: 20799--21922 Score: 1034
Period size: 164 Copynumber: 6.8 Consensus size: 164
20789 GCTCAAGGAA
* * * * * * * * *
20799 AGAAGGGTTATTTGCCAACAAAAGACCTTCAATTTCGACTACGCTAAGCTCGAAGGCATATCATT
1 AGAAGGGTTATATGCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATT
* * * * * * * **
20864 TACAGCATAGCTCAAGTCAAGAAGGGCTATCTGTCACCCAAAGACCTTCGATTTCAAATACGTTC
66 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTG----CCAAAGACCTTCGAGTTCGATTACACTC
* * * *
20929 AGCTCTAAGGCATATTATTAGCAGCATAACTTAAGTCG
127 AGCTCGAAGGCACATCATTTGCAGCATAACTTAAGTCG
* *
20967 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATATGCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATT
* * * * *
21032 TGTAGCATAACTTAAATCGAAAATGGCTATCTGCCAAAG-CCTTCGAGTTCGGTTACACTCAGCT
66 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCT
* **
21096 CAAAGGCACCAAGATTTGCAGCATAACTTAAGTCG
131 CGAAGGCA-CATCATTTGCAGCATAACTTAAGTCG
* *
21131 ATAAGGGTTATTTGCTAACCAAAGACCTTCGAGTTCGACTACGA-TCAGCTCCAAGGCACATCAT
1 AGAAGGGTTATATGCTAACCAAAGACCTTCGAGTTCGACTAC-ACTCAGCTCCAAGGCACATCAT
* *
21195 TTGTAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGC
65 TTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGC
*
21260 TTCGAGGGCACATCATTTGCAGCATAACTTAAGTCG
130 -TCGAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * ** * *
21296 AGAAGGGGTTATCTACCAACCAAAGACCTTTGAGTTCGACTATGCTCAGCTCCAAAGCACGTCAT
1 AGAA-GGGTTATATGCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCAT
* * ** * *
21361 TTGCAACATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCTAGTTAGATTACACTCAGC
65 TTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGC
* * * * * *
21426 TTTGACGGCACATCATTTACAGCATAACTCAAGGCT
130 -TCGAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * *
21462 AGAAGGGTTATATG-TCACCAAAAGACC-CCGAGTTCGATTACACTCAGCTTCGAGGGCACATCA
1 AGAAGGGTTATATGCTAACC-AAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATCA
* * * * * *
21525 TTTGTAGCATAACTCAAGTCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGC
64 TTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG----CCAAAGACCTTCGAGTTCGATTACAC
* * *
21590 TCAGTTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCG
125 TCAGCTCGAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * * * *
21630 AGAATGG--ATAT-CT-GCCAAAGACC-CCAAGTTCGATTACACTCAGCTTCGAGGTCACATCAT
1 AGAAGGGTTATATGCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGG-CACATCAT
* * * * * * * *
21690 TTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACAATGACCTTCGAGTTCGACTACGCTCA
65 TTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG-C-CAAAGACCTTCGAGTTCGATTACACTCA
* * * *
21755 GCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCA
128 GCTCGAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * *** *
21792 AGAAGGG-T-TAT-CT-ACCGAAGACCCTCAAGTTCGATTACACTCAGCTTCGGGGGCACATTAT
1 AGAAGGGTTATATGCTAACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATCAT
* *
21853 TTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCAAG-TCTGATTACAC
65 TTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG----CCAAAGACCTTCGAGTTC-GATTACAC
21917 TCAGCT
125 TCAGCT
21923 TAGAGGCAAA
Statistics
Matches: 807, Mismatches: 127, Indels: 47
0.82 0.13 0.05
Matches are distributed among these distances:
161 1 0.00
162 79 0.10
163 86 0.11
164 215 0.27
165 130 0.16
166 157 0.19
168 115 0.14
169 24 0.03
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (164 bp):
AGAAGGGTTATATGCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATT
TGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCT
CGAAGGCACATCATTTGCAGCATAACTTAAGTCG
Found at i:22537 original size:20 final size:20
Alignment explanation
Indices: 22512--22561 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
22502 AATTTTCATC
*
22512 CATATATTTTTTTATATATA
1 CATATATATTTTTATATATA
*
22532 CATATATATTTTTATTTATA
1 CATATATATTTTTATATATA
*
22552 TATATTATAT
1 CATA-TATAT
22562 AGTTTACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
CATATATATTTTTATATATA
Found at i:22616 original size:38 final size:38
Alignment explanation
Indices: 22547--22687 Score: 111
Period size: 38 Copynumber: 3.8 Consensus size: 38
22537 ATATTTTTAT
*
22547 TTATATATATTATATAG-TTTACAAATGATTTTCGAAAATA
1 TTATATATA-TATATAGTTTTA-AAATCATTTT-GAAAATA
*
22587 TGTATATATATATA-AGTTTTAAAA-CATTTT-AGAA-A
1 T-TATATATATATATAGTTTTAAAATCATTTTGAAAATA
* * **
22622 -TATATAT-CATATAGTTTTTAAAATCATTTTTAAAAGC
1 TTATATATATATATAG-TTTTAAAATCATTTTGAAAATA
22659 TTATATA-ATATATAGTTTTGAAAA-CATTT
1 TTATATATATATATAGTTTT-AAAATCATTT
22688 ATCTATTATA
Statistics
Matches: 85, Mismatches: 6, Indels: 23
0.75 0.05 0.20
Matches are distributed among these distances:
32 3 0.04
33 9 0.11
34 8 0.09
35 7 0.08
36 6 0.07
37 9 0.11
38 21 0.25
39 5 0.06
40 9 0.11
41 8 0.09
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (38 bp):
TTATATATATATATAGTTTTAAAATCATTTTGAAAATA
Found at i:22653 original size:36 final size:33
Alignment explanation
Indices: 22589--22813 Score: 144
Period size: 37 Copynumber: 6.5 Consensus size: 33
22579 CGAAAATATG
22589 TATATATATATAAG-TTTTAAAACA-TTTTAGAAA
1 TATATATATAT-AGTTTTTAAAACATTTTTA-AAA
22622 TATATATCATATAGTTTTTAAAATCATTTTTAAAA
1 TATATAT-ATATAGTTTTTAAAA-CATTTTTAAAA
*
22657 GCTTATATAATATATAGTTTTGAAAACA--TTT---A
1 ---TATAT-ATATATAGTTTTTAAAACATTTTTAAAA
* * *
22689 TCTAT-TATATAG-TTTTAAAACCTTTTTGAACAC
1 TATATATATATAGTTTTTAAAACATTTTT-AA-AA
* * *
22722 TATATAGTACATAATTTTGAAAACATTTTTTAAAAA
1 TATATA-TATATAGTTTTTAAAACA-TTTTT-AAAA
* *
22758 TATATAATATATATATATTTTAAAATATTTTTAAAAA
1 TATAT-ATATATA-GT-TTTTAAAACATTTTT-AAAA
22795 TATATATTATATAGTTTTT
1 TATATA-TATATAGTTTTT
22814 TGGAAATAAT
Statistics
Matches: 153, Mismatches: 16, Indels: 44
0.72 0.08 0.21
Matches are distributed among these distances:
26 8 0.05
27 7 0.05
28 3 0.02
29 4 0.03
32 1 0.01
33 13 0.08
34 12 0.08
35 17 0.11
36 26 0.17
37 33 0.22
38 27 0.18
39 2 0.01
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (33 bp):
TATATATATATAGTTTTTAAAACATTTTTAAAA
Found at i:22677 original size:26 final size:26
Alignment explanation
Indices: 22648--22709 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
22638 TTTAAAATCA
22648 TTTTTAAAAGC-TTATATAATATATAG
1 TTTTTAAAA-CATTATATAATATATAG
* * *
22674 TTTTGAAAACATTTATCTATTATATAG
1 TTTTTAAAACA-TTATATAATATATAG
22701 -TTTTAAAAC
1 TTTTTAAAAC
22710 CTTTTTGAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
25 1 0.03
26 16 0.53
27 13 0.43
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.47
Consensus pattern (26 bp):
TTTTTAAAACATTATATAATATATAG
Found at i:24254 original size:17 final size:17
Alignment explanation
Indices: 24232--24276 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
24222 TTATTATTCT
*
24232 TTTTTTCTTT-TATTTCA
1 TTTTTTATTTGTATTT-A
24249 TTTTTTATTTGTATTTA
1 TTTTTTATTTGTATTTA
24266 TTTATTTATTT
1 TTT-TTTATTT
24277 ATTTTCGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTTTATTTGTATTTA
Found at i:24269 original size:4 final size:4
Alignment explanation
Indices: 24240--24362 Score: 54
Period size: 4 Copynumber: 28.8 Consensus size: 4
24230 CTTTTTTTCT
24240 TTTA TTTCA TTT- TTTA TTTGTA TTTA TTTA TTTA TTTA TTT- TCGTTGA
1 TTTA TTT-A TTTA TTTA -TT-TA TTTA TTTA TTTA TTTA TTTA T--TT-A
* * * * *
24288 TTTA TTTTCA CTTA TTTA TTTTA TTTT TTTC TTCA TTTCC TTTAA TTTA
1 TTTA -TTT-A TTTA TTTA -TTTA TTTA TTTA TTTA TTT-A TTT-A TTTA
* * *
24337 TTT- CTTA GTTA TTTA TTTG TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
24363 TCTTTAACAT
Statistics
Matches: 91, Mismatches: 15, Indels: 26
0.69 0.11 0.20
Matches are distributed among these distances:
3 6 0.07
4 54 0.59
5 27 0.30
6 3 0.03
7 1 0.01
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:24290 original size:14 final size:14
Alignment explanation
Indices: 24271--24309 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
24261 ATTTATTTAT
*
24271 TTATTTATTTTC-G
1 TTATTTATTTTCAC
24284 TTGATTTATTTTCAC
1 TT-ATTTATTTTCAC
24299 TTATTTATTTT
1 TTATTTATTTT
24310 ATTTTTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 2 0.09
14 19 0.83
15 2 0.09
ACGTcount: A:0.18, C:0.08, G:0.05, T:0.69
Consensus pattern (14 bp):
TTATTTATTTTCAC
Found at i:25530 original size:24 final size:24
Alignment explanation
Indices: 25503--25556 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
25493 TAGTCACCAC
*
25503 TGCCACTTAGAATATGCACC-AAA
1 TGCCACGTAGAATATGCACCGAAA
25526 GTGCCACGTAGAATATGCACCGAAA
1 -TGCCACGTAGAATATGCACCGAAA
25551 TGCCAC
1 TGCCAC
25557 ATAGGTTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 25 0.89
25 3 0.11
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.19
Consensus pattern (24 bp):
TGCCACGTAGAATATGCACCGAAA
Found at i:26286 original size:20 final size:20
Alignment explanation
Indices: 26243--26291 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
26233 TTCAATTATT
* **
26243 GTATCGATACCTCAACCTTG
1 GTATCGATACCTCAACATCA
*
26263 GTATCGATACCTCCACATCA
1 GTATCGATACCTCAACATCA
26283 GTATCGATA
1 GTATCGATA
26292 TTACTTCAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (20 bp):
GTATCGATACCTCAACATCA
Found at i:28651 original size:18 final size:18
Alignment explanation
Indices: 28624--28678 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
28614 GTCCTTATAA
28624 TTAT-TTTATATTTATTT
1 TTATATTTATATTTATTT
28641 TTATATTTATATTTATTTT
1 TTATATTTATATTTA-TTT
*
28660 TTACTATTTTTATTT-TTT
1 TTA-TATTTATATTTATTT
28678 T
1 T
28679 ACTATTTGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
17 4 0.12
18 14 0.41
19 6 0.18
20 10 0.29
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (18 bp):
TTATATTTATATTTATTT
Found at i:28656 original size:29 final size:28
Alignment explanation
Indices: 28618--28672 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
28608 AATTAGGTCC
*
28618 TTATAATTATTTTATATTTATTTTTATAT
1 TTATAATTATTTTATA-CTATTTTTATAT
* *
28647 TTATATTTATTTTTTACTATTTTTAT
1 TTATAATTATTTTATACTATTTTTAT
28673 TTTTTTACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (28 bp):
TTATAATTATTTTATACTATTTTTATAT
Found at i:28673 original size:16 final size:17
Alignment explanation
Indices: 28652--28685 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
28642 TATATTTATA
28652 TTTA-TTTTTTACTATT
1 TTTATTTTTTTACTATT
28668 TTTATTTTTTTACTATT
1 TTTATTTTTTTACTATT
28685 T
1 T
28686 GTTGCTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTTTTTACTATT
Found at i:28676 original size:6 final size:6
Alignment explanation
Indices: 28618--28656 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
28608 AATTAGGTCC
* *
28618 TTATAA TTAT-T TTATAT TTATTT TTATAT TTATAT TTAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTAT
28657 TTTTTACTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTATAT
Found at i:30265 original size:2 final size:2
Alignment explanation
Indices: 30258--30283 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
30248 TCAATTTAAA
30258 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
30284 GAGAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36854 original size:2 final size:2
Alignment explanation
Indices: 36847--36880 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
36837 ATTGGCGGTC
36847 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36881 TTAAGAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41360 original size:29 final size:31
Alignment explanation
Indices: 41317--41374 Score: 102
Period size: 29 Copynumber: 1.9 Consensus size: 31
41307 AGGGAGTTAT
41317 ACGAGTGTGTTTAAGTCTTATGT-ATCTTCA
1 ACGAGTGTGTTTAAGTCTTATGTAATCTTCA
41347 ACGAGTG-GTTTAAGTCTTATGTAATCTT
1 ACGAGTGTGTTTAAGTCTTATGTAATCTT
41375 TTTTTGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (31 bp):
ACGAGTGTGTTTAAGTCTTATGTAATCTTCA
Found at i:53603 original size:16 final size:14
Alignment explanation
Indices: 53582--53622 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
53572 CCTGATACCA
53582 TGTAGAAAACAAAC
1 TGTAGAAAACAAAC
*
53596 TGTGTAGAAAACAGAC
1 --TGTAGAAAACAAAC
53612 TGTAGAAAACA
1 TGTAGAAAACA
53623 GACAAGTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 11 0.46
16 13 0.54
ACGTcount: A:0.51, C:0.12, G:0.20, T:0.17
Consensus pattern (14 bp):
TGTAGAAAACAAAC
Found at i:53617 original size:14 final size:15
Alignment explanation
Indices: 53582--53625 Score: 63
Period size: 14 Copynumber: 2.9 Consensus size: 15
53572 CCTGATACCA
*
53582 TGTAGAAAACAAACTG
1 TGTAGAAAACAGAC-G
53598 TGTAGAAAACAGAC-
1 TGTAGAAAACAGACG
53612 TGTAGAAAACAGAC
1 TGTAGAAAACAGAC
53626 AAGTCTGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 14 0.52
16 13 0.48
ACGTcount: A:0.50, C:0.14, G:0.20, T:0.16
Consensus pattern (15 bp):
TGTAGAAAACAGACG
Found at i:72477 original size:60 final size:60
Alignment explanation
Indices: 72385--72507 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 60
72375 GTCTCTCAAT
* ** *
72385 TATAGGGTGTTGCTTTGTTGAGTCACTTGACTATTAAAAGTTACAAAATGGTCACCCGAC
1 TATAGGATGTTGCTTTGTTGAGTCACCCGACTACTAAAAGTTACAAAATGGTCACCCGAC
* * * *
72445 TATAGGATGTTGCTTTGTTGAGTCCCCCGACTACTAAAAGTTACAAATTTGTCACTCGAC
1 TATAGGATGTTGCTTTGTTGAGTCACCCGACTACTAAAAGTTACAAAATGGTCACCCGAC
72505 TAT
1 TAT
72508 TTATTATGTT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (60 bp):
TATAGGATGTTGCTTTGTTGAGTCACCCGACTACTAAAAGTTACAAAATGGTCACCCGAC
Found at i:73884 original size:32 final size:32
Alignment explanation
Indices: 73843--73949 Score: 130
Period size: 32 Copynumber: 3.4 Consensus size: 32
73833 CATATGTATA
73843 CTGTCCATATGTCTCAAATGACATAGGTAATT
1 CTGTCCATATGTCTCAAATGACATAGGTAATT
** *
73875 CTGTCCATATGT-TC-CGTAGAACATAGGT-ATA
1 CTGTCCATATGTCTCAAAT-G-ACATAGGTAATT
*
73906 CTGTCCATATGTCTCAAAAGACATAGGTAATT
1 CTGTCCATATGTCTCAAATGACATAGGTAATT
*
73938 ATGTCCATATGT
1 CTGTCCATATGT
73950 TCCGTAGAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
30 1 0.02
31 25 0.40
32 36 0.58
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34
Consensus pattern (32 bp):
CTGTCCATATGTCTCAAATGACATAGGTAATT
Found at i:73905 original size:63 final size:63
Alignment explanation
Indices: 73815--73969 Score: 274
Period size: 63 Copynumber: 2.5 Consensus size: 63
73805 AGGTAAACTA
* * *
73815 TCCATATGTTCCTTAGAACATATGTATACTGTCCATATGTCTCAAATGACATAGGTAATTCTG
1 TCCATATGTTCCGTAGAACATATGTATACTGTCCATATGTCTCAAAAGACATAGGTAATTATG
*
73878 TCCATATGTTCCGTAGAACATAGGTATACTGTCCATATGTCTCAAAAGACATAGGTAATTATG
1 TCCATATGTTCCGTAGAACATATGTATACTGTCCATATGTCTCAAAAGACATAGGTAATTATG
73941 TCCATATGTTCCGTAGAACATATGTATAC
1 TCCATATGTTCCGTAGAACATATGTATAC
73970 CCTCGACTCT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 87 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (63 bp):
TCCATATGTTCCGTAGAACATATGTATACTGTCCATATGTCTCAAAAGACATAGGTAATTATG
Found at i:73962 original size:32 final size:31
Alignment explanation
Indices: 73774--73969 Score: 154
Period size: 31 Copynumber: 6.3 Consensus size: 31
73764 ATAAAGATCC
* *
73774 TAGGTA-ACTG-CCTATAGGTTCCGAT-GAACC
1 TAGGTATACTGTCC-ATATGTTCC-ATAGAACA
* * *
73804 TAGGTAAACTATCCATATGTTCCTTAGAACA
1 TAGGTATACTGTCCATATGTTCCATAGAACA
* *
73835 TATGTATACTGTCCATATG-TCTCAAATG-ACA
1 TAGGTATACTGTCCATATGTTC-CATA-GAACA
* *
73866 TAGGTAATTCTGTCCATATGTTCCGTAGAACA
1 TAGGT-ATACTGTCCATATGTTCCATAGAACA
* *
73898 TAGGTATACTGTCCATATGTCTCAAAAG-ACA
1 TAGGTATACTGTCCATATGT-TCCATAGAACA
*
73929 TAGGTAATTA-TGTCCATATGTTCCGTAGAACA
1 TAGGT-A-TACTGTCCATATGTTCCATAGAACA
*
73961 TATGTATAC
1 TAGGTATAC
73970 CCTCGACTCT
Statistics
Matches: 132, Mismatches: 21, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
30 11 0.08
31 68 0.52
32 49 0.37
33 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (31 bp):
TAGGTATACTGTCCATATGTTCCATAGAACA
Found at i:77176 original size:65 final size:59
Alignment explanation
Indices: 77062--77214 Score: 216
Period size: 65 Copynumber: 2.5 Consensus size: 59
77052 AGGTAAACTA
*
77062 TCCATATGTTCCTTAGAACATAGGTATACTGTATGTCTCAAAAGACATAGATAATTATG
1 TCCATATGTTCCGTAGAACATAGGTATACTGTATGTCTCAAAAGACATAGATAATTATG
* * *
77121 TCCATATGTTCCGTAGAGAACATAGGTATATTGTCCATATGTCTCAAAAGACATAGGTAATTCTG
1 TCCATATGTTCCGT--AGAACATAGGTATACTG----TATGTCTCAAAAGACATAGATAATTATG
77186 TCCATATGTTCCGTAGAACATAGGTATAC
1 TCCATATGTTCCGTAGAACATAGGTATAC
77215 CCTCGACTCA
Statistics
Matches: 83, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
59 13 0.16
61 16 0.19
63 14 0.17
65 40 0.48
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (59 bp):
TCCATATGTTCCGTAGAACATAGGTATACTGTATGTCTCAAAAGACATAGATAATTATG
Found at i:77193 original size:32 final size:31
Alignment explanation
Indices: 77093--77194 Score: 109
Period size: 32 Copynumber: 3.2 Consensus size: 31
77083 AGGTATACTG
*
77093 TATGTCTCAAAAGACATAGATAATTATGTCCA
1 TATGTCTCAAAAGACATAGGTAATT-TGTCCA
* *
77125 TATGT-TCCGTAGAGAACATAGGT-ATATTGTCCA
1 TATGTCT-C-AAAAG-ACATAGGTAAT-TTGTCCA
77158 TATGTCTCAAAAGACATAGGTAATTCTGTCCA
1 TATGTCTCAAAAGACATAGGTAATT-TGTCCA
77190 TATGT
1 TATGT
77195 TCCGTAGAAC
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
31 10 0.17
32 22 0.38
33 17 0.29
34 9 0.16
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (31 bp):
TATGTCTCAAAAGACATAGGTAATTTGTCCA
Found at i:77207 original size:32 final size:31
Alignment explanation
Indices: 77106--77211 Score: 108
Period size: 32 Copynumber: 3.3 Consensus size: 31
77096 GTCTCAAAAG
*
77106 ACATAGATAATTATGTCCATATGTTCCGTAGAGA
1 ACATAGGTAATT-TGTCCATATGTTCCGT--AGA
***
77140 ACATAGGT-ATATTGTCCATATGTCTCAAAAG-
1 ACATAGGTAAT-TTGTCCATATGT-TCCGTAGA
77171 ACATAGGTAATTCTGTCCATATGTTCCGTAGA
1 ACATAGGTAATT-TGTCCATATGTTCCGTAGA
77203 ACATAGGTA
1 ACATAGGTA
77212 TACCCTCGAC
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
31 13 0.22
32 24 0.40
33 13 0.22
34 10 0.17
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (31 bp):
ACATAGGTAATTTGTCCATATGTTCCGTAGA
Done.