genome.fa.s6162.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006162.1 Hibiscus syriacus cultivar Beakdansim tig00014637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100680

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682--720	2	20.0	2	94	5	71	48	0	0	51	1.00
892--918	2	13.5	2	100	0	54	51	48	0	0	1.00
3260--3303	19	2.4	18	88	7	70	18	13	9	59	1.60
6981--7015	16	2.2	16	89	0	52	31	0	17	51	1.45
6978--7019	20	2.1	20	95	0	75	33	0	16	50	1.46
10280--10329	25	2.0	25	84	3	66	74	2	16	8	1.15
12157--12189	2	16.5	2	100	0	66	51	0	0	48	1.00
12524--12551	2	14.0	2	100	0	56	50	0	0	50	1.00
15795--15821	11	2.5	11	100	0	54	25	7	29	37	1.83
17673--17716	18	2.4	18	88	7	63	70	0	9	20	1.14
17675--17769	44	2.2	44	88	0	136	67	1	11	20	1.28
17719--17761	18	2.4	18	88	0	68	65	2	16	16	1.38
18521--18560	19	2.0	20	85	4	55	60	5	2	32	1.32
21447--21499	21	2.8	17	75	22	52	56	0	1	41	1.10
30490--30531	3	13.3	3	85	9	57	35	0	0	64	0.94
30490--30531	10	4.4	10	82	5	52	35	0	0	64	0.94
30491--30529	13	3.0	13	84	0	60	38	0	0	61	0.96
30920--30954	13	2.7	13	86	0	52	34	0	0	65	0.93
30388--31226	422	2.0	412	91	2	1356	33	24	13	28	1.93
33130--33497	131	2.8	131	84	2	515	32	10	15	40	1.82
35234--35269	15	2.4	15	95	0	63	44	19	13	22	1.86
37055--37079	5	5.0	5	100	0	50	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40859--40946	41	2.2	40	81	6	104	10	2	37	50	1.49
40878--40964	41	2.2	39	84	13	117	11	2	39	47	1.53
67091--67133	17	2.6	16	85	7	59	16	4	0	79	0.90
72314--72446	39	3.4	38	91	4	203	29	24	29	17	1.97
74437--74491	27	2.0	27	100	0	110	16	21	14	47	1.82
77206--77312	42	2.5	42	89	0	160	20	16	15	46	1.84
77486--77539	12	4.5	12	76	6	56	48	0	0	51	1.00
77510--77682	29	6.0	27	69	20	86	46	0	1	51	1.12
77486--77563	23	3.3	24	84	8	81	46	0	0	53	1.00
77589--77682	29	3.2	28	80	16	95	45	0	2	52	1.12
77698--77867	90	1.9	86	81	9	200	50	4	0	45	1.20
78034--78105	15	4.9	15	83	5	85	36	19	5	38	1.75
78025--78090	29	2.2	30	89	7	100	33	19	4	42	1.72
78794--78826	7	4.7	7	88	11	50	75	0	0	24	0.80
78793--78837	20	2.2	20	80	7	56	68	6	0	24	1.13
83258--83305	22	2.2	22	100	0	96	25	27	12	35	1.92
85175--85408	45	5.2	45	94	1	389	34	9	24	31	1.88
91481--91554	22	3.5	22	70	10	73	37	12	21	28	1.89
91460--91576	41	2.8	42	88	5	166	39	11	23	26	1.88
92096--92166	22	3.2	22	67	11	63	32	11	26	29	1.91
92078--92323	45	5.4	45	90	1	368	34	10	23	30	1.90
92078--92241	23	7.3	23	63	12	79	33	10	25	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92945--93022	3	26.3	3	77	12	81	33	1	3	61	1.22

Tables:   1

The End!