genome.fa.s6163.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006163.1 Hibiscus syriacus cultivar Beakdansim tig00014639_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117207

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7377--7410	17	1.9	18	94	5	61	41	0	38	20	1.53
20510--20631	40	3.0	40	100	0	244	32	27	17	22	1.96
33409--33754	167	2.0	172	89	4	531	21	15	22	41	1.89
36162--36657	131	3.8	131	86	2	631	40	17	10	31	1.84
36169--36649	261	1.8	261	86	0	692	39	17	11	31	1.85
38818--38878	18	3.4	18	75	6	70	57	1	0	40	1.08
39510--39618	42	2.6	40	77	11	121	31	21	20	27	1.98
39164--39615	225	2.0	222	82	6	536	33	18	16	31	1.94
39633--40081	239	1.9	237	84	3	605	35	14	16	33	1.89
40113--40274	58	2.8	57	84	5	184	42	17	8	31	1.79
40433--40542	52	2.1	52	87	0	157	41	16	10	30	1.83
43811--46254	818	3.0	819	99	0	4829	27	19	15	37	1.92
46529--46565	13	2.9	13	92	4	58	51	8	21	18	1.72
56336--56370	18	1.9	18	88	0	52	20	17	22	40	1.92
56341--56379	18	2.2	18	85	0	51	23	17	25	33	1.96
57991--58025	18	1.9	18	94	0	61	20	14	22	42	1.88
57996--58034	18	2.2	18	90	0	60	23	15	25	35	1.94
61536--61793	53	4.9	53	88	0	390	21	27	20	30	1.98
62301--62380	42	1.9	42	92	0	133	33	21	18	26	1.96
62201--62759	122	4.5	122	86	6	751	29	21	18	30	1.97
62419--62767	42	8.2	42	67	13	194	28	22	19	30	1.98
62613--62637	13	1.9	13	100	0	50	24	20	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62491--62760	135	2.0	135	90	0	423	27	21	18	32	1.97
71257--71289	2	16.5	2	100	0	66	51	0	0	48	1.00
75561--75597	16	2.3	16	90	9	58	5	10	0	83	0.79
77059--77125	17	3.9	17	96	0	116	38	4	20	35	1.73
77059--77176	34	3.4	34	80	4	121	39	7	18	33	1.79
84135--84198	28	2.3	28	94	0	110	28	29	4	37	1.77
90595--90637	18	2.4	18	84	7	52	23	9	2	65	1.34
94870--94924	24	2.3	25	84	15	80	61	7	18	12	1.53
95828--95855	8	3.5	8	100	0	56	21	0	0	78	0.75
96603--96656	18	2.9	19	79	17	53	25	7	0	66	1.17
99117--99184	30	2.3	30	94	0	118	32	19	16	32	1.93
100648--100687	3	13.3	3	94	0	71	65	0	0	35	0.93
102849--102888	5	8.2	5	89	10	57	57	0	22	20	1.41
102855--102886	11	3.1	11	91	8	50	62	0	18	18	1.33
102849--102888	16	2.4	17	91	8	64	57	0	22	20	1.41
106103--106228	60	2.1	60	83	2	155	34	15	17	33	1.91
107809--107872	24	2.7	24	80	2	76	50	21	7	20	1.73

Tables:   1

The End!