Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006164.1 Hibiscus syriacus cultivar Beakdansim tig00014642_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83421

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9432--9465
6
6.0
6
90
10
54
88
0
0
11
0.52
9432--9465
17
2.0
17
100
0
68
88
0
0
11
0.52
11711--11762
26
2.0
26
100
0
104
23
34
30
11
1.90
15060--15088
13
2.1
14
93
6
51
79
0
0
20
0.74
16560--16588
15
1.9
15
100
0
58
34
20
17
27
1.95
16400--16730
162
2.0
161
96
1
626
33
19
15
31
1.93
19266--19321
3
17.0
3
85
10
58
66
3
30
0
1.09
19295--19425
68
1.9
68
89
3
201
41
10
29
18
1.84
22996--23038
19
2.4
17
82
14
59
34
20
13
30
1.92
23005--23044
19
2.1
19
100
0
80
35
25
12
27
1.92
24825--24858
17
2.1
16
88
5
50
61
2
0
35
1.11
27004--27038
16
2.2
16
94
0
61
34
11
2
51
1.53
29335--29554
73
3.0
73
87
1
325
17
32
20
28
1.96
36401--36435
18
1.9
18
100
0
70
25
34
22
17
1.96
41511--41558
20
2.4
21
82
10
64
27
14
4
54
1.59
43772--43821
7
7.7
7
84
10
63
72
0
0
28
0.86
43757--43824
3
21.7
3
76
8
64
70
2
0
26
1.01
44765--44861
31
3.2
30
73
16
76
50
5
4
40
1.44
48298--48342
24
1.9
23
86
4
63
17
6
4
71
1.25
48369--48436
24
2.8
25
80
10
79
13
25
20
41
1.88
50860--50903
12
3.7
12
100
0
88
15
15
27
40
1.88
59333--59557
64
3.5
63
80
8
224
27
20
20
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63823--63907
24
3.5
26
76
15
74
32
20
4
42
1.72
63856--63889
12
2.8
12
90
0
59
38
23
5
32
1.79
64192--64368
64
2.8
64
83
5
214
25
19
22
32
1.98
64255--64416
64
2.5
63
86
5
202
25
22
20
30
1.98
71759--71789
2
15.5
2
100
0
62
48
0
0
51
1.00
72583--72641
21
2.8
21
81
0
64
18
5
22
54
1.63
72844--73018
43
4.1
43
90
1
280
28
24
22
24
1.99
72844--73018
85
2.0
86
92
1
289
28
24
22
24
1.99
74204--74901
84
8.4
84
82
4
747
24
20
24
29
1.99
74236--74879
248
2.6
247
82
4
765
25
20
24
29
1.99
74204--74901
165
4.2
165
83
3
900
24
20
24
29
1.99
78935--78967
17
1.9
17
93
0
57
72
9
12
6
1.26
80106--80147
9
4.6
9
94
5
75
76
0
9
14
1.02
81431--81517
40
2.2
39
86
8
115
43
5
3
47
1.44
81387--81625
74
3.3
74
75
18
186
43
7
4
44
1.51
81397--81633
35
6.6
35
69
18
116
43
7
4
44
1.51
81766--81832
28
2.4
28
82
2
80
52
2
4
40
1.37

Tables:   1

The End!