genome.fa.s6165.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006165.1 Hibiscus syriacus cultivar Beakdansim tig00014644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39949

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
856--971	44	2.6	45	94	1	198	32	20	24	22	1.98
869--1093	121	1.9	121	93	1	389	34	20	20	24	1.97
906--1048	77	1.9	73	90	5	223	33	22	20	23	1.97
979--1137	45	3.5	44	87	6	203	32	20	22	24	1.98
1027--1307	121	2.3	121	92	3	462	32	20	21	25	1.97
1072--1213	75	1.9	73	84	7	187	32	20	21	25	1.98
1145--1258	45	2.5	45	84	2	129	31	19	21	27	1.97
833--1258	166	2.6	166	90	1	676	32	19	22	25	1.97
2026--2088	22	2.9	22	87	0	90	38	12	12	36	1.82
2450--2601	54	2.9	54	85	2	182	25	24	14	36	1.93
7859--7922	20	3.2	20	85	8	78	65	4	12	17	1.42
10249--10297	17	2.7	18	87	9	64	63	2	8	26	1.34
10271--10316	15	3.1	15	76	14	51	69	0	8	21	1.15
10806--10841	17	2.1	18	94	5	65	41	0	0	58	0.98
12526--12584	21	2.7	22	73	5	66	23	25	18	32	1.97
12573--12642	20	3.5	20	88	3	97	35	20	18	25	1.95
12613--12686	20	3.7	20	83	0	85	28	24	16	31	1.96
12862--12903	22	1.9	22	100	0	84	28	42	9	19	1.82
13316--13387	20	3.6	20	92	0	108	20	19	25	34	1.96
13372--13410	20	2.0	20	100	0	78	10	10	23	56	1.63
13374--13417	20	2.2	20	91	0	70	11	11	22	54	1.68
15142--15191	18	2.8	18	100	0	100	32	20	6	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15345--15407	20	3.2	20	88	0	90	34	26	22	15	1.94
15450--15545	20	4.8	20	90	0	138	18	19	22	38	1.93
16046--16150	21	5.0	21	76	3	104	20	36	19	23	1.95
17535--17600	30	2.2	30	97	0	123	28	4	13	53	1.60
17574--17724	54	2.8	54	98	0	293	28	4	16	50	1.65
17803--18061	20	13.9	20	71	16	162	22	18	22	36	1.95
17770--17890	33	3.5	33	75	14	116	22	20	21	35	1.96
17933--18058	54	2.3	54	97	0	234	20	21	22	35	1.96
17765--18061	74	4.0	73	75	8	278	22	19	21	36	1.95
20539--20585	24	2.0	24	95	0	85	36	21	21	21	1.96
21420--21536	20	5.8	20	78	7	121	29	19	18	32	1.96
21420--21536	40	2.9	40	84	2	155	29	19	18	32	1.96
21529--21580	21	2.4	22	74	6	61	36	19	25	19	1.95
21745--21799	3	18.0	3	84	3	65	58	0	0	41	0.98
22977--23132	21	7.6	21	69	4	129	20	18	24	36	1.95
22957--23155	41	4.9	41	96	0	371	18	19	23	38	1.93
23144--23257	22	5.5	22	73	12	100	21	17	22	37	1.94
24001--24052	20	2.6	20	96	0	95	40	25	25	9	1.85
24789--24832	20	2.2	20	91	0	70	52	25	6	15	1.68
24850--24928	20	3.9	20	89	1	113	49	12	16	21	1.79
25078--25158	39	2.1	39	100	0	162	43	7	7	41	1.61
25343--25433	20	4.5	20	88	2	128	23	19	10	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25322--25422	20	4.9	20	89	4	141	21	19	12	45	1.84
29939--29974	18	2.0	18	100	0	72	44	11	11	33	1.75
36528--36568	20	2.0	20	90	0	64	31	31	19	17	1.95
37429--37515	32	2.7	31	84	8	106	33	16	16	34	1.91
38288--38330	21	2.0	21	81	0	50	27	27	25	18	1.98
38851--39059	102	2.1	101	90	6	325	25	12	23	37	1.91

Tables:   1

The End!