Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006166.1 Hibiscus syriacus cultivar Beakdansim tig00014650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50009

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--72
13
4.2
13
74
13
56
35
3
13
47
1.61
267--322
21
2.7
21
88
2
87
19
26
25
28
1.99
623--654
16
2.0
17
88
11
50
43
21
21
12
1.86
1040--1085
16
2.9
16
93
0
74
39
2
23
34
1.67
10415--10444
10
3.1
10
90
9
53
30
0
10
60
1.30
11538--11612
30
2.4
30
78
10
80
46
1
12
40
1.49
16240--16274
18
1.9
18
94
0
61
20
45
22
11
1.82
16227--16263
13
2.8
13
87
0
56
21
43
24
10
1.84
16305--16431
29
4.3
29
71
13
107
29
6
22
41
1.78
16304--16451
29
5.0
29
69
6
82
31
5
22
40
1.76
17384--17630
42
5.8
41
86
5
316
19
24
23
32
1.98
17384--17591
84
2.5
84
94
1
355
20
24
24
31
1.98
19562--19635
2
37.0
2
100
0
148
50
0
0
50
1.00
20545--20582
3
12.7
3
100
0
76
68
0
0
31
0.90
20792--21142
134
2.6
134
90
0
542
24
18
29
27
1.98
21155--21212
29
2.0
29
90
6
91
46
12
17
24
1.81
21339--21477
32
4.0
32
73
18
127
38
12
14
35
1.83
22245--22462
106
2.1
104
81
5
249
41
11
16
30
1.83
22804--22841
4
10.0
4
88
11
62
23
0
26
50
1.50
28836--28863
2
14.0
2
100
0
56
50
0
0
50
1.00
29762--29808
3
15.7
3
79
16
53
72
0
0
27
0.85
34703--34774
31
2.3
31
78
7
83
36
15
16
31
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39933--40002
37
1.9
37
88
2
106
34
4
15
45
1.66
40413--40444
16
2.0
16
93
0
55
34
6
25
34
1.81
44505--44565
21
3.2
21
65
29
64
31
4
21
42
1.74
44497--44615
35
3.3
37
88
8
174
31
5
19
43
1.72
49812--49863
18
3.1
16
75
24
54
32
1
1
63
1.16

Tables:   1

The End!