Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006167.1 Hibiscus syriacus cultivar Beakdansim tig00014651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101905

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3448--3507
23
2.6
23
80
15
70
36
0
10
53
1.35
7821--7858
17
2.3
17
90
4
60
57
5
0
36
1.21
7836--7881
24
1.9
24
86
8
67
65
4
0
30
1.12
14617--14654
18
2.1
19
90
5
60
63
5
7
23
1.42
16676--16706
2
15.5
2
100
0
62
51
48
0
0
1.00
24553--24641
45
1.9
47
90
4
146
29
11
22
37
1.89
34333--34398
28
2.4
28
80
14
75
74
0
19
6
1.03
34281--34387
40
2.7
39
76
18
107
72
0
16
10
1.10
34339--34387
19
2.6
19
93
6
82
77
0
14
8
0.98
34298--34387
9
9.4
9
72
23
69
74
0
14
11
1.07
35811--36221
162
2.5
161
87
4
549
29
15
24
30
1.96
35814--36228
55
7.7
55
82
6
449
29
15
25
29
1.96
39460--39521
29
2.1
31
82
11
76
41
3
11
43
1.56
43158--43207
22
2.3
23
83
16
70
32
8
20
40
1.81
55296--55373
35
2.2
35
80
15
90
53
8
8
28
1.62
57938--58039
42
2.5
41
79
6
125
17
29
33
19
1.95
59049--59079
16
1.9
16
100
0
62
58
22
12
6
1.58
59148--59208
16
3.8
16
86
0
86
54
24
13
8
1.66
59379--59425
16
2.9
16
90
3
76
42
25
14
17
1.87
60289--60363
24
3.1
24
92
0
114
54
21
12
12
1.69
60309--60364
14
4.3
14
82
17
75
51
25
14
8
1.70
60302--60349
10
4.4
10
78
19
51
54
22
12
10
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61002--61027
2
13.0
2
100
0
52
50
0
0
50
1.00
64577--64620
20
2.2
20
83
0
52
27
31
38
2
1.69
68348--68417
31
2.3
30
90
2
104
35
5
24
34
1.79
69203--69255
26
2.0
26
85
0
70
26
3
18
50
1.64
69214--69264
26
2.0
26
88
0
75
27
3
19
49
1.66
69661--69706
20
2.3
20
88
0
65
30
10
17
41
1.84
69764--69826
30
2.1
30
87
0
90
38
14
19
28
1.90
77513--77557
21
2.1
21
87
0
63
31
28
24
15
1.96
78385--78480
32
3.0
32
78
14
117
30
16
18
34
1.93
78472--78594
30
4.1
30
93
1
194
21
20
26
31
1.98
81684--81735
18
2.9
18
79
0
50
26
23
28
21
1.99

Tables:   1

The End!