genome.fa.s6168.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006168.1 Hibiscus syriacus cultivar Beakdansim tig00014652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53842

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7491--7535	20	2.2	20	84	7	56	13	22	0	64	1.28
10780--10828	23	2.1	23	85	7	64	26	2	14	57	1.48
12384--12437	20	2.6	21	91	8	85	29	16	27	25	1.97
16897--16926	13	2.4	12	94	5	51	76	6	3	13	1.11
19269--19302	9	3.9	9	84	7	52	61	2	0	35	1.11
19265--19303	17	2.4	17	95	4	71	61	5	0	33	1.18
19349--19378	10	3.0	10	95	0	51	36	0	30	33	1.58
20994--21045	2	26.0	2	100	0	104	50	0	0	50	1.00
25281--25319	20	2.0	20	85	10	53	35	2	0	61	1.10
26906--26937	17	1.9	17	93	6	57	59	0	6	34	1.23
28035--28403	20	18.5	20	84	5	451	34	26	18	20	1.96
29085--29131	24	2.0	24	87	8	69	25	14	21	38	1.92
29304--29328	12	2.1	12	100	0	50	72	0	28	0	0.86
31603--31895	19	16.4	19	83	14	392	47	18	20	14	1.83
31631--31917	52	5.4	55	90	8	356	46	17	21	14	1.83
31603--31917	128	2.6	128	88	7	462	46	18	20	14	1.83
31924--32021	19	5.4	19	84	13	143	14	23	17	44	1.85
31924--32033	19	6.0	19	83	11	86	15	21	17	45	1.85
32132--32167	14	2.6	14	86	4	56	47	22	0	30	1.52
34062--34126	18	3.4	19	83	10	80	44	27	16	10	1.81
34062--34195	19	7.6	19	75	18	119	45	23	19	11	1.82
34117--34173	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34062--34190	33	3.8	33	87	5	168	46	24	18	10	1.81
34191--34282	34	2.8	33	88	8	134	7	18	28	45	1.76
34191--34319	19	7.3	19	72	19	109	8	17	28	45	1.77
34363--34648	93	3.1	93	96	2	540	46	18	12	22	1.82
36360--36429	19	3.7	19	94	0	113	42	22	22	11	1.85
36338--36429	38	2.6	35	80	10	107	44	20	23	10	1.83
36441--36495	14	3.6	14	73	21	56	9	25	23	41	1.83
36425--36495	33	2.2	33	94	0	124	8	22	25	43	1.81
36436--36517	33	2.5	33	89	2	119	9	25	21	42	1.84
36448--36536	20	4.8	20	72	19	75	12	24	19	43	1.85
36615--36685	33	2.2	33	92	0	115	47	18	22	11	1.80
36870--36922	21	2.3	25	68	25	60	18	20	37	22	1.94
37063--37255	20	9.6	20	82	5	219	19	19	25	35	1.95
37063--37255	60	3.2	60	83	0	251	19	19	25	35	1.95
37311--37362	20	2.6	20	96	0	95	21	13	26	38	1.90
38502--38625	64	1.9	64	84	9	164	37	19	16	25	1.93
45339--45462	64	1.9	64	85	6	171	37	18	16	26	1.92
50622--50662	8	5.2	8	82	5	57	34	0	29	36	1.58
50743--51594	128	6.7	128	91	3	1406	21	23	21	33	1.97
50743--51597	253	3.4	255	92	2	1426	21	23	21	33	1.97
52555--52626	21	3.5	21	87	9	103	20	27	33	18	1.96

Tables:   1

The End!