Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006169.1 Hibiscus syriacus cultivar Beakdansim tig00014656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78899
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:337 original size:12 final size:12
Alignment explanation
Indices: 320--356 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
310 CTACCAAAAA
320 TATTATTATATT
1 TATTATTATATT
*
332 TATTATTATGTT
1 TATTATTATATT
344 TATTATTACTATT
1 TATTATTA-TATT
357 AATTTACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 19 0.86
13 3 0.14
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (12 bp):
TATTATTATATT
Found at i:2015 original size:15 final size:15
Alignment explanation
Indices: 1981--2018 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
1971 TAGACCATAT
1981 ATTTTTATATATTCAA
1 ATTTTTATATATTC-A
1997 ATTTTTATATATCTC-
1 ATTTTTATATAT-TCA
2012 ATTTTTA
1 ATTTTTA
2019 CAGGACAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.33
16 12 0.57
17 2 0.10
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTTTATATATTCA
Found at i:2564 original size:28 final size:27
Alignment explanation
Indices: 2508--2564 Score: 62
Period size: 29 Copynumber: 2.1 Consensus size: 27
2498 TGGACTATTT
*
2508 GAGTTTTGAAGAAAAAAAAAGAACCAA
1 GAGTTTTGAAGAAAAAAAAAGAACAAA
* *
2535 GAGTTTTAGAGAGAAGAAAAAA-CACAAA
1 GAGTTTT-GA-AGAAAAAAAAAGAACAAA
2563 GA
1 GA
2565 AAAAGAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 7 0.28
28 8 0.32
29 10 0.40
ACGTcount: A:0.58, C:0.07, G:0.21, T:0.14
Consensus pattern (27 bp):
GAGTTTTGAAGAAAAAAAAAGAACAAA
Found at i:13800 original size:67 final size:67
Alignment explanation
Indices: 13687--13818 Score: 210
Period size: 67 Copynumber: 2.0 Consensus size: 67
13677 TAATTCTCTA
* * * *
13687 GACACGTGTTAATCATCATAAGAGTCTATTGGTGAAGAGATTGAAGGATTCTTGCACTTGATATC
1 GACACGTGTTAATCATCAAAAGAGGCTATTAGTGAAGAGATGGAAGGATTCTTGCACTTGATATC
13752 TG
66 TG
* *
13754 GACACGTGTTAATCCTCAAAAGAGGCTATTAGTGAAGAGATGGAAGGATTTTTGCACTTGATATC
1 GACACGTGTTAATCATCAAAAGAGGCTATTAGTGAAGAGATGGAAGGATTCTTGCACTTGATATC
13819 AGGAGTAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (67 bp):
GACACGTGTTAATCATCAAAAGAGGCTATTAGTGAAGAGATGGAAGGATTCTTGCACTTGATATC
TG
Found at i:17182 original size:26 final size:25
Alignment explanation
Indices: 17153--17206 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
17143 ATTATTTTGG
*
17153 TATTTATTATA-TATTTTAATTAAATA
1 TATTT-TTATAGTATTCT-ATTAAATA
17179 TATTTTTATAGTTATTCTATTAAATA
1 TATTTTTATAG-TATTCTATTAAATA
17205 TA
1 TA
17207 AATGTTCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 5 0.20
26 15 0.60
27 5 0.20
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (25 bp):
TATTTTTATAGTATTCTATTAAATA
Found at i:18345 original size:24 final size:24
Alignment explanation
Indices: 18317--18367 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
18307 TTGGCATCAG
18317 CAAGACTTCGGTATTCTGCCTCAA
1 CAAGACTTCGGTATTCTGCCTCAA
18341 CAAGACTTCGGTATTCTGCCTCAA
1 CAAGACTTCGGTATTCTGCCTCAA
18365 CAA
1 CAA
18368 TTGAACTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (24 bp):
CAAGACTTCGGTATTCTGCCTCAA
Found at i:21116 original size:157 final size:157
Alignment explanation
Indices: 20830--21144 Score: 603
Period size: 157 Copynumber: 2.0 Consensus size: 157
20820 AATGTACCTA
*
20830 TGACTCTTCATGCAACATACAATGAGCTTATAAATCATATTATAATCATCTATTGATCAATGTTT
1 TGACTCTTCATGCAACATACAATGAGCTTATAAATCATATTATAATCATCTATCGATCAATGTTT
*
20895 TAAAATCATAAACATTTAAAAATTCATCATCGTAAAATTCGTACTTGGGCAGTTCATACCCTAAA
66 TAAAATCATAAACATTTAAAAATTCATCATCGTAAAAATCGTACTTGGGCAGTTCATACCCTAAA
20960 CCATCCATAAAACATTTATATAAACAT
131 CCATCCATAAAACATTTATATAAACAT
20987 TGACTCTTCATGCAACATACAATGAGCTTATAAATCATATTATAATCATCTATCGATCAATGTTT
1 TGACTCTTCATGCAACATACAATGAGCTTATAAATCATATTATAATCATCTATCGATCAATGTTT
21052 TAAAATCATAAACATTTAAAAATTCATCATCGTAAAAATCGTACTTGGGCAGTTCATACCCTAAA
66 TAAAATCATAAACATTTAAAAATTCATCATCGTAAAAATCGTACTTGGGCAGTTCATACCCTAAA
*
21117 CCATCCATAAAATATTTATATAAACAT
131 CCATCCATAAAACATTTATATAAACAT
21144 T
1 T
21145 ATAGAAATGA
Statistics
Matches: 155, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (157 bp):
TGACTCTTCATGCAACATACAATGAGCTTATAAATCATATTATAATCATCTATCGATCAATGTTT
TAAAATCATAAACATTTAAAAATTCATCATCGTAAAAATCGTACTTGGGCAGTTCATACCCTAAA
CCATCCATAAAACATTTATATAAACAT
Found at i:27463 original size:20 final size:20
Alignment explanation
Indices: 27431--27469 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
27421 TCGAATATTG
*
27431 ACCTTTGGCTATCGATACTA
1 ACCTTTGGCTATCAATACTA
27451 ACCTCTTGG-TATCAATACT
1 ACCT-TTGGCTATCAATACT
27470 TCTGGTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (20 bp):
ACCTTTGGCTATCAATACTA
Found at i:31433 original size:23 final size:23
Alignment explanation
Indices: 31376--31472 Score: 123
Period size: 23 Copynumber: 4.3 Consensus size: 23
31366 CACCACTGGT
31376 CACATA-ATTTG-CACCGAAGTG-C
1 CACATAGATTTGTC-CCGAAG-GAC
31398 CACAT--ATTTGTCCCGAAGGAC
1 CACATAGATTTGTCCCGAAGGAC
*
31419 CACATAGATTTGTCCCGAATGAC
1 CACATAGATTTGTCCCGAAGGAC
*
31442 CACATAGGTTTGTCCCGAAGGAC
1 CACATAGATTTGTCCCGAAGGAC
31465 CACATAGA
1 CACATAGA
31473 ACCCTCGACT
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.01
21 17 0.25
22 6 0.09
23 43 0.64
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (23 bp):
CACATAGATTTGTCCCGAAGGAC
Found at i:31466 original size:46 final size:44
Alignment explanation
Indices: 31376--31472 Score: 137
Period size: 46 Copynumber: 2.2 Consensus size: 44
31366 CACCACTGGT
31376 CACATA-ATTTGCACCGAAGTGCCACATATTTGTCCCGAAGGAC
1 CACATAGATTTGCACCGAAGTGCCACATATTTGTCCCGAAGGAC
31419 CACATAGATTTGTC-CCGAA-TGACCACATAGGTTTGTCCCGAAGGAC
1 CACATAGATTTG-CACCGAAGTG-CCACATA--TTTGTCCCGAAGGAC
31465 CACATAGA
1 CACATAGA
31473 ACCCTCGACT
Statistics
Matches: 49, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
43 8 0.16
44 17 0.35
45 1 0.02
46 23 0.47
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (44 bp):
CACATAGATTTGCACCGAAGTGCCACATATTTGTCCCGAAGGAC
Found at i:35756 original size:50 final size:50
Alignment explanation
Indices: 35681--35784 Score: 190
Period size: 50 Copynumber: 2.1 Consensus size: 50
35671 TATAGTTCTC
35681 ATATGTGTACATGGAATAATAAAGAAATAATTTTGAATACAATGTATGTA
1 ATATGTGTACATGGAATAATAAAGAAATAATTTTGAATACAATGTATGTA
**
35731 ATATGTGTACATGGGCTAATAAAGAAATAATTTTGAATACAATGTATGTA
1 ATATGTGTACATGGAATAATAAAGAAATAATTTTGAATACAATGTATGTA
35781 ATAT
1 ATAT
35785 ATATATATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.35
Consensus pattern (50 bp):
ATATGTGTACATGGAATAATAAAGAAATAATTTTGAATACAATGTATGTA
Found at i:35983 original size:16 final size:17
Alignment explanation
Indices: 35952--35984 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
35942 AAGATATAGA
35952 ATATGAACGTAAGAGATC
1 ATATGAACG-AAGAGATC
35970 ATATGAAC-AAGAGAT
1 ATATGAACGAAGAGAT
35985 AAGAGATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.48, C:0.09, G:0.21, T:0.21
Consensus pattern (17 bp):
ATATGAACGAAGAGATC
Found at i:52198 original size:61 final size:61
Alignment explanation
Indices: 52100--52234 Score: 252
Period size: 61 Copynumber: 2.2 Consensus size: 61
52090 CCTTGCAGTT
*
52100 GGTTTTAGCTTCCATTCATAGCTTTGAGCTACGTAGTAGTTGGTTCAGCTCCCTCGTCTTA
1 GGTTTGAGCTTCCATTCATAGCTTTGAGCTACGTAGTAGTTGGTTCAGCTCCCTCGTCTTA
*
52161 GGTTTGAGCTTCCATTCATAGCTTTGAGCTACTTAGTAGTTGGTTCAGCTCCCTCGTCTTA
1 GGTTTGAGCTTCCATTCATAGCTTTGAGCTACGTAGTAGTTGGTTCAGCTCCCTCGTCTTA
52222 GGTTTGAGCTTCC
1 GGTTTGAGCTTCC
52235 TATTAGTTGA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 72 1.00
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (61 bp):
GGTTTGAGCTTCCATTCATAGCTTTGAGCTACGTAGTAGTTGGTTCAGCTCCCTCGTCTTA
Found at i:52269 original size:41 final size:41
Alignment explanation
Indices: 52179--52274 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 41
52169 CTTCCATTCA
* * * *
52179 TAGCTTTGAGCTACTTAGTAGTTGGTTCAGCTCCCTCGTCT
1 TAGCTTTGAGCTACCTAGTAGTTGATTCAGCTCCATCCTCT
* * * *
52220 TAGGTTTGAGCTTCCTATTAGTTGATTCAGTTTCCATCCT-T
1 TAGCTTTGAGCTACCTAGTAGTTGATTCAG-CTCCATCCTCT
52261 TAGCTTTGAGCTAC
1 TAGCTTTGAGCTAC
52275 TTGTCAGCTG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
41 38 0.86
42 6 0.14
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.42
Consensus pattern (41 bp):
TAGCTTTGAGCTACCTAGTAGTTGATTCAGCTCCATCCTCT
Found at i:59781 original size:31 final size:31
Alignment explanation
Indices: 59727--59831 Score: 147
Period size: 31 Copynumber: 3.4 Consensus size: 31
59717 TAAGGCGACC
* * *
59727 CTTGGGTAGGCTTTGCGGTCCCGAGATCTTT
1 CTTGGGTAGGCCTTGTGGCCCCGAGATCTTT
* *
59758 CTTGTGTAGGCCTTGTGGCCCCGAGATTTTT
1 CTTGGGTAGGCCTTGTGGCCCCGAGATCTTT
*
59789 CTTGGGTAGGCCTTGTGGCCCCAAGAGTCTTT
1 CTTGGGTAGGCCTTGTGGCCCCGAGA-TCTTT
59821 CTTGGGTAGGC
1 CTTGGGTAGGC
59832 TCTCAGGCCC
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 50 0.77
32 15 0.23
ACGTcount: A:0.10, C:0.23, G:0.32, T:0.34
Consensus pattern (31 bp):
CTTGGGTAGGCCTTGTGGCCCCGAGATCTTT
Found at i:59841 original size:32 final size:31
Alignment explanation
Indices: 59727--59845 Score: 116
Period size: 31 Copynumber: 3.8 Consensus size: 31
59717 TAAGGCGACC
* * *
59727 CTTGGGTAGGCTTTGC-GGTCCCGAGATCTTT
1 CTTGGGTAGGCCTT-CTGGCCCCAAGATCTTT
* * * *
59758 CTTGTGTAGGCCTTGTGGCCCCGAGATTTTT
1 CTTGGGTAGGCCTTCTGGCCCCAAGATCTTT
*
59789 CTTGGGTAGGCCTTGTGGCCCCAAGAGTCTTT
1 CTTGGGTAGGCCTTCTGGCCCCAAGA-TCTTT
*
59821 CTTGGGTAGG-CTCTCAGGCCCCAAG
1 CTTGGGTAGGCCT-TCTGGCCCCAAG
59846 GTGTTTCCTT
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
31 51 0.68
32 24 0.32
ACGTcount: A:0.12, C:0.25, G:0.31, T:0.32
Consensus pattern (31 bp):
CTTGGGTAGGCCTTCTGGCCCCAAGATCTTT
Found at i:66873 original size:31 final size:31
Alignment explanation
Indices: 66838--66903 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
66828 GTCATAACCC
* *
66838 GACCCAACCCGACCCATTTACCCGACCCGTT
1 GACCCAACCCGACCCATTAACCCGACCCATT
* **
66869 GACCCGACCCGACCTGTTAACCCGACCCATT
1 GACCCAACCCGACCCATTAACCCGACCCATT
66900 GACC
1 GACC
66904 TGTTGACCGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.47, G:0.15, T:0.15
Consensus pattern (31 bp):
GACCCAACCCGACCCATTAACCCGACCCATT
Found at i:66878 original size:18 final size:18
Alignment explanation
Indices: 66857--66896 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
66847 CGACCCATTT
*
66857 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTAACCCG
*
66875 ACCCGACCTGTTAACCCG
1 ACCCGACCCGTTAACCCG
66893 ACCC
1 ACCC
66897 ATTGACCTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.50, G:0.17, T:0.12
Consensus pattern (18 bp):
ACCCGACCCGTTAACCCG
Found at i:66879 original size:13 final size:13
Alignment explanation
Indices: 66844--66879 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
66834 ACCCGACCCA
* *
66844 ACCCGACCCATTT
1 ACCCGACCCGTTG
66857 ACCCGACCCGTTG
1 ACCCGACCCGTTG
66870 ACCCGACCCG
1 ACCCGACCCG
66880 ACCTGTTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.19, C:0.50, G:0.17, T:0.14
Consensus pattern (13 bp):
ACCCGACCCGTTG
Found at i:69430 original size:24 final size:24
Alignment explanation
Indices: 69353--69448 Score: 83
Period size: 24 Copynumber: 4.0 Consensus size: 24
69343 ATTTTCGAAT
*
69353 TGAATTCTGTTCTGATA-C-GTTA
1 TGAATTCTGTTCTGATATCTGATA
* * *
69375 CCTTAATTTTGTTCTGAT-TCTGATC
1 --TGAATTCTGTTCTGATATCTGATA
69400 T-AGATTCTGTTCTGATATCTGATA
1 TGA-ATTCTGTTCTGATATCTGATA
* *
69424 TGAATTCTGTTTTGATTTCTGATA
1 TGAATTCTGTTCTGATATCTGATA
69448 T
1 T
69449 CTCCGTTTAC
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
22 1 0.02
23 13 0.22
24 42 0.71
25 3 0.05
ACGTcount: A:0.21, C:0.14, G:0.16, T:0.50
Consensus pattern (24 bp):
TGAATTCTGTTCTGATATCTGATA
Found at i:70421 original size:30 final size:30
Alignment explanation
Indices: 70377--70445 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
70367 GATTTATTTA
* *
70377 GTGACCAAATTATAAA-TTTGGTAAAGTTTG
1 GTGACCAAAGTATAAACTTT-GAAAAGTTTG
*
70407 GTGACTAAAGTATAAACTTTGAAAAGTTTAG
1 GTGACCAAAGTATAAACTTTGAAAAGTTT-G
70438 G-GACCAAA
1 GTGACCAAA
70446 ATGTAATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 28 0.85
31 5 0.15
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (30 bp):
GTGACCAAAGTATAAACTTTGAAAAGTTTG
Found at i:72602 original size:25 final size:25
Alignment explanation
Indices: 72573--72744 Score: 71
Period size: 25 Copynumber: 7.5 Consensus size: 25
72563 ATGGCAAGTA
*
72573 TATGGGTTAAATAAGCTTACGAGCT
1 TATGGGATAAATAAGCTTACGAGCT
*
72598 TATGGGATAAAT--G-GTA--AG-T
1 TATGGGATAAATAAGCTTACGAGCT
*
72617 ATATTGG-TAAAATAAGCTTACGAGCT
1 -TATGGGAT-AAATAAGCTTACGAGCT
*
72643 TATGGGATAAAT--G-GTA--AG-T
1 TATGGGATAAATAAGCTTACGAGCT
*
72662 ATATTGG-TAAAATAAGCTTACGAGCT
1 -TATGGGAT-AAATAAGCTTACGAGCT
* *
72688 TATAGGATAAAT--G-GTA--AG-T
1 TATGGGATAAATAAGCTTACGAGCT
*
72707 ATATTGG-TAAAATAAGCTTACGAGCT
1 -TATGGGAT-AAATAAGCTTACGAGCT
72733 TATGGGATAAAT
1 TATGGGATAAAT
72745 GTTAAATATA
Statistics
Matches: 107, Mismatches: 13, Indels: 54
0.61 0.07 0.31
Matches are distributed among these distances:
19 6 0.06
20 33 0.31
22 9 0.08
23 9 0.08
25 44 0.41
26 6 0.06
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (25 bp):
TATGGGATAAATAAGCTTACGAGCT
Found at i:72630 original size:45 final size:45
Alignment explanation
Indices: 72537--72761 Score: 380
Period size: 45 Copynumber: 5.0 Consensus size: 45
72527 GTAACCATGC
* * * *
72537 AAATAAGCTTACGAGCTTATGGAAT-AATGGCAAGTATATGGGTT
1 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAGTATATTGGTA
72581 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAGTATATTGGTA
72626 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAGTATATTGGTA
*
72671 AAATAAGCTTACGAGCTTATAGGATAAATGGTAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAGTATATTGGTA
* *
72716 AAATAAGCTTACGAGCTTATGGGATAAATGTTAAATATATTGGTA
1 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAGTATATTGGTA
72761 A
1 A
72762 GAAATTTTAT
Statistics
Matches: 172, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
44 24 0.14
45 148 0.86
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGGATAAATGGTAAGTATATTGGTA
Found at i:77859 original size:10 final size:10
Alignment explanation
Indices: 77844--77868 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
77834 GACTCCTAAG
77844 ATCTTGATAC
1 ATCTTGATAC
77854 ATCTTGATAC
1 ATCTTGATAC
77864 ATCTT
1 ATCTT
77869 ATTTCCGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.44
Consensus pattern (10 bp):
ATCTTGATAC
Done.