genome.fa.s617.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000617.1 Hibiscus syriacus cultivar Beakdansim tig00001195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93975

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518--601	31	2.7	31	87	5	107	26	28	28	16	1.97
548--620	31	2.4	30	84	6	101	27	32	24	15	1.95
7862--7912	19	2.6	20	87	3	68	45	5	15	33	1.71
11059--11092	5	7.0	5	93	6	61	0	17	0	82	0.67
11059--11098	15	2.7	14	88	11	62	0	17	0	82	0.67
11815--11865	19	2.6	20	87	3	68	45	5	15	33	1.71
13128--13169	21	2.0	21	86	9	59	38	0	2	59	1.10
14740--14793	20	2.7	19	78	15	65	37	16	22	24	1.94
14833--14887	22	2.6	22	82	5	69	30	16	23	29	1.96
14741--14980	95	2.5	95	86	6	312	34	17	23	25	1.96
15320--15755	55	7.9	55	91	1	658	32	18	20	27	1.96
15990--16126	68	2.0	68	88	0	202	29	16	27	27	1.97
16058--16207	81	1.9	81	86	0	219	32	14	26	26	1.95
15976--16345	149	2.5	149	89	1	546	34	12	24	28	1.92
16495--16606	45	2.5	47	75	8	115	39	10	23	26	1.87
17355--17392	19	2.0	19	94	0	67	21	31	18	28	1.97
17476--17508	17	1.9	17	93	0	57	45	12	6	36	1.66
19209--19306	25	3.9	25	79	0	106	27	24	18	29	1.98
29034--29129	50	1.9	50	93	2	167	38	20	8	32	1.83
30366--30405	3	13.3	3	100	0	80	67	0	0	32	0.91
36274--36299	8	3.2	8	100	0	52	11	0	34	53	1.37
36372--36586	110	2.0	106	86	7	299	44	16	15	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37489--37554	31	2.1	32	83	8	82	59	13	3	24	1.49
37520--37583	28	2.2	29	81	15	80	54	17	3	25	1.57
37484--37791	152	2.0	155	92	3	525	49	16	4	29	1.67
37786--37957	75	2.2	78	85	6	233	31	7	12	48	1.69
37952--38016	29	2.2	30	86	8	89	21	1	20	56	1.50
38999--39717	108	6.6	108	69	11	451	38	12	15	33	1.85
38906--39593	225	3.1	226	85	3	862	39	12	15	32	1.85
40238--40378	23	6.1	23	90	0	219	31	13	18	36	1.90
40353--40683	75	4.4	75	84	1	414	33	15	12	38	1.85
40353--40675	148	2.2	148	84	1	412	34	15	13	37	1.86
41431--41488	20	3.0	20	80	7	66	32	17	12	37	1.86
44695--44893	65	3.1	64	84	9	244	28	17	22	32	1.96
47539--47621	23	3.6	22	70	15	62	27	22	25	24	2.00
61615--61697	28	3.0	28	68	10	73	42	0	1	56	1.07
62733--62766	2	17.5	2	93	6	61	50	0	0	50	1.00
64104--64223	60	2.0	60	83	3	152	28	23	24	24	2.00
66494--66541	17	2.9	17	75	6	55	66	4	4	25	1.27
66721--66752	9	3.6	9	91	0	55	34	56	0	9	1.32
68421--68568	73	2.0	73	92	0	242	24	28	19	27	1.99
68741--68801	17	3.6	16	77	18	61	62	6	0	31	1.21
72460--72529	32	2.3	30	82	9	79	44	11	2	41	1.55
72458--72539	31	2.6	29	74	14	74	45	10	3	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73520--73562	21	2.2	19	87	8	59	34	2	9	53	1.46
73519--73562	19	2.1	22	88	12	67	34	2	9	54	1.44
73981--74056	23	3.3	23	64	22	59	44	9	9	36	1.68
74007--74039	16	2.1	16	94	0	57	36	12	6	45	1.66
77503--77580	2	39.0	2	94	0	138	50	2	0	47	1.15
79224--79282	27	2.3	25	82	8	66	38	0	8	52	1.32
82482--82511	13	2.3	13	100	0	60	6	0	6	86	0.70
82489--82537	18	2.5	19	78	21	57	12	4	2	81	0.91
82530--82598	23	2.9	24	76	20	74	24	8	0	66	1.19
82530--82597	24	2.9	23	75	16	68	25	8	0	66	1.20
84320--84431	29	3.7	30	77	8	120	33	8	2	55	1.45
84320--84433	30	3.8	29	78	13	124	34	8	2	54	1.45
89035--89126	30	3.2	29	73	14	91	21	11	7	58	1.58
91231--91300	27	2.6	27	84	2	88	21	14	12	51	1.75
91251--91299	20	2.5	19	83	6	62	22	14	10	53	1.71
91250--91314	32	2.0	33	84	3	87	23	15	10	50	1.75

Tables:   1

The End!